Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 PSME2-210ENST00000559493 702 ntTSL 25.17□□□□□ -1.581e-6■■■□□ 16.2
SMNDC1O75940 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.55■■□□□ 1.043e-9■■■□□ 16.2
SMNDC1O75940 PUF60-216ENST00000531897 785 ntTSL 520.01■□□□□ 0.793e-9■■■□□ 16.2
SMNDC1O75940 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.63e-9■■■□□ 16.2
SMNDC1O75940 PUF60-217ENST00000531951 973 ntTSL 316.63■□□□□ 0.253e-9■■■□□ 16.2
SMNDC1O75940 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.223e-9■■■□□ 16.2
SMNDC1O75940 PUF60-205ENST00000524570 1934 ntTSL 215.56■□□□□ 0.083e-9■■■□□ 16.2
SMNDC1O75940 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.043e-9■■■□□ 16.2
SMNDC1O75940 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.04□□□□□ -0.163e-9■■■□□ 16.2
SMNDC1O75940 PUF60-212ENST00000528320 922 ntTSL 213.6□□□□□ -0.233e-9■■■□□ 16.2
SMNDC1O75940 PUF60-221ENST00000533162 761 ntTSL 313.37□□□□□ -0.273e-9■■■□□ 16.2
SMNDC1O75940 PUF60-207ENST00000526459 1003 ntTSL 213.34□□□□□ -0.273e-9■■■□□ 16.2
SMNDC1O75940 PUF60-215ENST00000529999 867 ntTSL 312.61□□□□□ -0.393e-9■■■□□ 16.2
SMNDC1O75940 PUF60-211ENST00000527744 1007 ntTSL 211.67□□□□□ -0.543e-9■■■□□ 16.2
SMNDC1O75940 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC11.46□□□□□ -0.573e-9■■■□□ 16.2
SMNDC1O75940 PUF60-210ENST00000527584 547 ntTSL 27.5□□□□□ -1.213e-9■■■□□ 16.2
SMNDC1O75940 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC14.32□□□□□ -0.123e-6■■■□□ 16.2
SMNDC1O75940 TANGO2-221ENST00000476940 414 ntTSL 511.77□□□□□ -0.535e-6■■■□□ 16.2
SMNDC1O75940 RNU6ATAC-201ENST00000408749 126 ntBASIC3.54□□□□□ -1.841e-323■■■□□ 16.1
SMNDC1O75940 ARFGAP1-214ENST00000520485 1548 ntTSL 220.32■□□□□ 0.841e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.591e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.77■□□□□ 0.281e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.171e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.5■□□□□ 0.071e-7■■■□□ 16.1
SMNDC1O75940 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.034e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.021e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.11■□□□□ 0.011e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-221ENST00000549047 1040 ntTSL 513.66□□□□□ -0.221e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-218ENST00000523460 572 ntTSL 412.69□□□□□ -0.381e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-206ENST00000518601 905 ntTSL 511.72□□□□□ -0.531e-7■■■□□ 16.1
SMNDC1O75940 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.541e-7■■■□□ 16.1
SMNDC1O75940 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.461e-7■■■□□ 16.1
SMNDC1O75940 UBE2I-215ENST00000567074 884 ntTSL 1 (best)17.16■□□□□ 0.343e-6■■■□□ 16.1
SMNDC1O75940 PTBP1-211ENST00000587094 273 ntTSL 310.37□□□□□ -0.756e-7■■■□□ 16.1
SMNDC1O75940 GNAS-244ENST00000485673 715 ntTSL 524.94■■□□□ 1.584e-7■■■□□ 16.1
SMNDC1O75940 GNAS-243ENST00000484504 662 ntTSL 224.94■■□□□ 1.584e-7■■■□□ 16.1
SMNDC1O75940 GNAS-256ENST00000603546 573 ntTSL 524.53■■□□□ 1.524e-7■■■□□ 16.1
SMNDC1O75940 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.414e-7■■■□□ 16.1
SMNDC1O75940 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.78■■□□□ 1.44e-7■■■□□ 16.1
SMNDC1O75940 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.78■■□□□ 1.44e-7■■■□□ 16.1
SMNDC1O75940 GNAS-257ENST00000604005 693 ntTSL 323.59■■□□□ 1.374e-7■■■□□ 16.1
SMNDC1O75940 GNAS-228ENST00000469431 702 ntTSL 523.59■■□□□ 1.374e-7■■■□□ 16.1
SMNDC1O75940 GNAS-235ENST00000478585 543 ntTSL 223.59■■□□□ 1.374e-7■■■□□ 16.1
SMNDC1O75940 GNAS-229ENST00000470512 913 ntTSL 522.67■■□□□ 1.224e-7■■■□□ 16.1
SMNDC1O75940 GNAS-224ENST00000464960 986 ntTSL 222.56■■□□□ 1.24e-7■■■□□ 16.1
SMNDC1O75940 GNAS-237ENST00000480232 893 ntTSL 522.46■■□□□ 1.194e-7■■■□□ 16.1
SMNDC1O75940 GNAS-233ENST00000476935 828 ntTSL 321.33■■□□□ 1.014e-7■■■□□ 16.1
SMNDC1O75940 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.964e-7■■■□□ 16.1
SMNDC1O75940 GNAS-234ENST00000477931 1663 ntTSL 1 (best)20.96■□□□□ 0.954e-7■■■□□ 16.1
SMNDC1O75940 GNAS-240ENST00000481768 1903 ntTSL 1 (best)19.6■□□□□ 0.734e-7■■■□□ 16.1
SMNDC1O75940 GNAS-248ENST00000488652 953 ntTSL 519.11■□□□□ 0.654e-7■■■□□ 16.1
SMNDC1O75940 GNAS-238ENST00000480975 1534 ntTSL 517.52■□□□□ 0.44e-7■■■□□ 16.1
SMNDC1O75940 GNAS-226ENST00000467321 733 ntTSL 517.03■□□□□ 0.324e-7■■■□□ 16.1
SMNDC1O75940 GNAS-220ENST00000461152 278 ntTSL 516.52■□□□□ 0.244e-7■■■□□ 16.1
SMNDC1O75940 GNAS-250ENST00000491348 1068 ntTSL 316.23■□□□□ 0.194e-7■■■□□ 16.1
SMNDC1O75940 GNAS-230ENST00000472183 911 ntTSL 316.23■□□□□ 0.194e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-211ENST00000519531 1490 ntTSL 316.05■□□□□ 0.162e-7■■■□□ 16.1
SMNDC1O75940 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.98□□□□□ -0.014e-7■■■□□ 16.1
SMNDC1O75940 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.72□□□□□ -0.054e-7■■■□□ 16.1
SMNDC1O75940 GNAS-222ENST00000464624 3764 ntTSL 514.52□□□□□ -0.094e-7■■■□□ 16.1
SMNDC1O75940 ARFGAP1-215ENST00000522403 995 ntTSL 514.41□□□□□ -0.12e-7■■■□□ 16.1
SMNDC1O75940 GNAS-223ENST00000464788 583 ntTSL 214.21□□□□□ -0.134e-7■■■□□ 16.1
SMNDC1O75940 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC13.49□□□□□ -0.254e-7■■■□□ 16.1
SMNDC1O75940 GNAS-249ENST00000490374 675 ntTSL 313.43□□□□□ -0.264e-7■■■□□ 16.1
SMNDC1O75940 GNAS-221ENST00000462499 492 ntTSL 212.88□□□□□ -0.354e-7■■■□□ 16.1
SMNDC1O75940 GNAS-241ENST00000482112 704 ntTSL 312.88□□□□□ -0.354e-7■■■□□ 16.1
SMNDC1O75940 GNAS-206ENST00000349036 581 ntTSL 511.86□□□□□ -0.514e-7■■■□□ 16.1
SMNDC1O75940 GNAS-219ENST00000453292 632 ntTSL 511.75□□□□□ -0.534e-7■■■□□ 16.1
SMNDC1O75940 GNAS-205ENST00000338783 641 ntTSL 311.59□□□□□ -0.554e-7■■■□□ 16.1
SMNDC1O75940 GNAS-208ENST00000371075 2551 ntTSL 1 (best) BASIC11.12□□□□□ -0.634e-7■■■□□ 16.1
SMNDC1O75940 GNAS-217ENST00000423897 736 ntTSL 310.7□□□□□ -0.74e-7■■■□□ 16.1
SMNDC1O75940 GNAS-209ENST00000371081 730 ntTSL 2 BASIC10.67□□□□□ -0.74e-7■■■□□ 16.1
SMNDC1O75940 GNAS-252ENST00000493744 812 ntTSL 210.48□□□□□ -0.734e-7■■■□□ 16.1
SMNDC1O75940 GNAS-204ENST00000313949 2578 ntTSL 1 (best) BASIC10.27□□□□□ -0.774e-7■■■□□ 16.1
SMNDC1O75940 GNAS-239ENST00000481039 756 ntTSL 510.23□□□□□ -0.774e-7■■■□□ 16.1
SMNDC1O75940 GNAS-247ENST00000488546 897 ntTSL 59.89□□□□□ -0.834e-7■■■□□ 16.1
SMNDC1O75940 GNAS-216ENST00000419558 729 ntTSL 39.75□□□□□ -0.854e-7■■■□□ 16.1
SMNDC1O75940 GNAS-225ENST00000467227 543 ntTSL 38.58□□□□□ -1.044e-7■■■□□ 16.1
SMNDC1O75940 GNAS-218ENST00000450130 595 ntTSL 58.38□□□□□ -1.074e-7■■■□□ 16.1
SMNDC1O75940 GNAS-227ENST00000468895 583 ntTSL 37.82□□□□□ -1.164e-7■■■□□ 16.1
SMNDC1O75940 GNAS-251ENST00000492907 790 ntTSL 37.52□□□□□ -1.214e-7■■■□□ 16.1
SMNDC1O75940 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.88□□□□□ -1.634e-7■■■□□ 16.1
SMNDC1O75940 RABL6-209ENST00000466096 3949 ntTSL 1 (best)15.67■□□□□ 0.11e-6■■■□□ 16
SMNDC1O75940 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.46■■□□□ 1.033e-7■■■□□ 16
SMNDC1O75940 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.93e-8■■■□□ 16
SMNDC1O75940 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.28■□□□□ 0.843e-7■■■□□ 16
SMNDC1O75940 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.22■□□□□ 0.832e-15■■■□□ 16
SMNDC1O75940 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.67■□□□□ 0.582e-15■■■□□ 16
SMNDC1O75940 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.383e-7■■■□□ 16
SMNDC1O75940 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.12■□□□□ 0.332e-15■■■□□ 16
SMNDC1O75940 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.76■□□□□ 0.113e-8■■■□□ 16
SMNDC1O75940 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.073e-8■■■□□ 16
SMNDC1O75940 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC14.08□□□□□ -0.162e-15■■■□□ 16
SMNDC1O75940 VDAC2-210ENST00000472137 859 ntTSL 513.88□□□□□ -0.193e-8■■■□□ 16
SMNDC1O75940 VDAC2-213ENST00000498394 804 ntTSL 512.62□□□□□ -0.393e-8■■■□□ 16
SMNDC1O75940 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.423e-8■■■□□ 16
SMNDC1O75940 USP14-208ENST00000582707 1803 ntTSL 5 BASIC12.35□□□□□ -0.432e-6■■■□□ 16
SMNDC1O75940 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC11.95□□□□□ -0.53e-8■■■□□ 16
SMNDC1O75940 NFRKB-201ENST00000446488 5093 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.643e-8■■■□□ 16
SMNDC1O75940 USP14-202ENST00000383589 2168 ntTSL 5 BASIC10.91□□□□□ -0.662e-6■■■□□ 16
Retrieved 100 of 11,362 protein–RNA pairs in 163.5 ms