Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS4BO75351 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS4BO75351 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
VPS4BO75351 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
VPS4BO75351 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.17■□□□□ 0.82
VPS4BO75351 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VPS4BO75351 CDCA4P2-201ENST00000441182 718 ntBASIC20.17■□□□□ 0.82
VPS4BO75351 AC006970.2-201ENST00000450065 779 ntBASIC20.17■□□□□ 0.82
VPS4BO75351 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS4BO75351 AC104771.1-201ENST00000603335 964 ntBASIC20.17■□□□□ 0.82
VPS4BO75351 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS4BO75351 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS4BO75351 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS4BO75351 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VPS4BO75351 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
VPS4BO75351 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS4BO75351 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS4BO75351 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS4BO75351 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS4BO75351 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS4BO75351 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS4BO75351 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VPS4BO75351 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VPS4BO75351 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS4BO75351 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.15■□□□□ 0.82
VPS4BO75351 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS4BO75351 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4BO75351 AL109923.1-201ENST00000618799 583 ntBASIC20.15■□□□□ 0.82
VPS4BO75351 AC105233.4-201ENST00000642045 216 ntBASIC20.15■□□□□ 0.82
VPS4BO75351 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4BO75351 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4BO75351 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VPS4BO75351 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4BO75351 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4BO75351 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4BO75351 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS4BO75351 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS4BO75351 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VPS4BO75351 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4BO75351 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4BO75351 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS4BO75351 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VPS4BO75351 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
VPS4BO75351 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
VPS4BO75351 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.14■□□□□ 0.81
VPS4BO75351 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS4BO75351 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
VPS4BO75351 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS4BO75351 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS4BO75351 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 AC055733.4-201ENST00000638462 1354 ntBASIC20.14■□□□□ 0.81
VPS4BO75351 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
VPS4BO75351 RAP2CP1-201ENST00000605103 478 ntBASIC20.14■□□□□ 0.81
VPS4BO75351 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 BID-214ENST00000617586 542 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS4BO75351 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
VPS4BO75351 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS4BO75351 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
VPS4BO75351 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
VPS4BO75351 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS4BO75351 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS4BO75351 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS4BO75351 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
VPS4BO75351 AC073314.1-201ENST00000568729 2216 ntBASIC20.13■□□□□ 0.81
VPS4BO75351 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS4BO75351 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS4BO75351 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms