Protein–RNA interactions for Protein: Q9NRQ5

SMCO4, Single-pass membrane and coiled-coil domain-containing protein 4, humanhuman

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4Q9NRQ5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 AL049812.1-201ENST00000432563 2267 ntBASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMCO4Q9NRQ5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMCO4Q9NRQ5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 AC099778.1-201ENST00000568593 1911 ntBASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 CHST11-202ENST00000546689 756 ntTSL 2 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 MIR3960-201ENST00000583311 91 ntBASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 CHML-204ENST00000638121 920 ntTSL 2 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMCO4Q9NRQ5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 CA15P2-201ENST00000611168 834 ntBASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO4Q9NRQ5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 AC079598.2-202ENST00000546624 1451 ntBASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO4Q9NRQ5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO4Q9NRQ5 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO4Q9NRQ5 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO4Q9NRQ5 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
SMCO4Q9NRQ5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.28■□□□□ 0.2
SMCO4Q9NRQ5 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms