Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.26■□□□□ 0.99
CDH4P55283 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 HLA-L-209ENST00000420110 1011 ntBASIC21.26■□□□□ 0.99
CDH4P55283 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.26■□□□□ 0.99
CDH4P55283 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 AC105036.2-201ENST00000569468 176 ntBASIC21.26■□□□□ 0.99
CDH4P55283 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.26■□□□□ 0.99
CDH4P55283 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CDH4P55283 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CDH4P55283 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDH4P55283 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDH4P55283 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CDH4P55283 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.25■□□□□ 0.99
CDH4P55283 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.25■□□□□ 0.99
CDH4P55283 FEM1AP4-201ENST00000443167 1987 ntBASIC21.25■□□□□ 0.99
CDH4P55283 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
CDH4P55283 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.25■□□□□ 0.99
CDH4P55283 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CDH4P55283 AL512625.2-201ENST00000417533 625 ntBASIC21.25■□□□□ 0.99
CDH4P55283 AL109923.1-201ENST00000618799 583 ntBASIC21.25■□□□□ 0.99
CDH4P55283 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CDH4P55283 AL049796.1-201ENST00000565336 1766 ntBASIC21.25■□□□□ 0.99
CDH4P55283 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
CDH4P55283 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CDH4P55283 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.24■□□□□ 0.99
CDH4P55283 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
CDH4P55283 AC104771.1-201ENST00000603335 964 ntBASIC21.24■□□□□ 0.99
CDH4P55283 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CDH4P55283 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CDH4P55283 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CDH4P55283 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH4P55283 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH4P55283 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH4P55283 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.23■□□□□ 0.99
CDH4P55283 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH4P55283 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.23■□□□□ 0.99
CDH4P55283 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
CDH4P55283 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CDH4P55283 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CDH4P55283 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.22■□□□□ 0.99
CDH4P55283 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
CDH4P55283 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 TSPY6P-201ENST00000448518 926 ntBASIC21.22■□□□□ 0.99
CDH4P55283 AC093787.1-201ENST00000450396 207 ntBASIC21.22■□□□□ 0.99
CDH4P55283 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CDH4P55283 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.22■□□□□ 0.99
CDH4P55283 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.22■□□□□ 0.99
CDH4P55283 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.22■□□□□ 0.99
CDH4P55283 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CDH4P55283 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
CDH4P55283 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 AC026310.3-201ENST00000625186 2373 ntBASIC21.21■□□□□ 0.99
CDH4P55283 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CDH4P55283 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CDH4P55283 GUSBP6-202ENST00000438529 1198 ntBASIC21.21■□□□□ 0.99
CDH4P55283 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.21■□□□□ 0.99
CDH4P55283 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.21■□□□□ 0.99
CDH4P55283 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CDH4P55283 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CDH4P55283 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CDH4P55283 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH4P55283 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH4P55283 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH4P55283 SLC29A4P1-201ENST00000398760 971 ntBASIC21.2■□□□□ 0.98
CDH4P55283 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.2■□□□□ 0.98
CDH4P55283 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CDH4P55283 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.2■□□□□ 0.98
CDH4P55283 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.2■□□□□ 0.98
CDH4P55283 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CDH4P55283 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms