Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.5
SHISA3A0PJX4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 TSPY9P-201ENST00000440215 945 ntBASIC18.2■□□□□ 0.5
SHISA3A0PJX4 TSPY11P-201ENST00000442607 1045 ntBASIC18.2■□□□□ 0.5
SHISA3A0PJX4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 FP700111.2-201ENST00000619190 1892 ntBASIC18.2■□□□□ 0.5
SHISA3A0PJX4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
SHISA3A0PJX4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHISA3A0PJX4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.18■□□□□ 0.5
SHISA3A0PJX4 AC116562.4-201ENST00000641316 2276 ntBASIC18.18■□□□□ 0.5
SHISA3A0PJX4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 AC098818.2-201ENST00000564925 2320 ntBASIC18.17■□□□□ 0.5
SHISA3A0PJX4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.17■□□□□ 0.5
SHISA3A0PJX4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHISA3A0PJX4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.15■□□□□ 0.5
SHISA3A0PJX4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms