Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
YBX1P67809 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
YBX1P67809 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
YBX1P67809 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.47■□□□□ 0.87
YBX1P67809 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
YBX1P67809 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
YBX1P67809 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.47■□□□□ 0.87
YBX1P67809 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.47■□□□□ 0.87
YBX1P67809 NTF6G-201ENST00000591094 616 ntBASIC20.47■□□□□ 0.87
YBX1P67809 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.47■□□□□ 0.87
YBX1P67809 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
YBX1P67809 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.47■□□□□ 0.87
YBX1P67809 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
YBX1P67809 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.47■□□□□ 0.87
YBX1P67809 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.47■□□□□ 0.87
YBX1P67809 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.46■□□□□ 0.87
YBX1P67809 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
YBX1P67809 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.46■□□□□ 0.87
YBX1P67809 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.46■□□□□ 0.87
YBX1P67809 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.46■□□□□ 0.87
YBX1P67809 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
YBX1P67809 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.46■□□□□ 0.87
YBX1P67809 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.46■□□□□ 0.87
YBX1P67809 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
YBX1P67809 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
YBX1P67809 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.45■□□□□ 0.86
YBX1P67809 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.45■□□□□ 0.86
YBX1P67809 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.45■□□□□ 0.86
YBX1P67809 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.45■□□□□ 0.86
YBX1P67809 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
YBX1P67809 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
YBX1P67809 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.44■□□□□ 0.86
YBX1P67809 KRT87P-202ENST00000534226 1464 ntBASIC20.44■□□□□ 0.86
YBX1P67809 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.44■□□□□ 0.86
YBX1P67809 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.44■□□□□ 0.86
YBX1P67809 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.44■□□□□ 0.86
YBX1P67809 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.44■□□□□ 0.86
YBX1P67809 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
YBX1P67809 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
YBX1P67809 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.43■□□□□ 0.86
YBX1P67809 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
YBX1P67809 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
YBX1P67809 AC104187.1-201ENST00000607510 612 ntBASIC20.43■□□□□ 0.86
YBX1P67809 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
YBX1P67809 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
YBX1P67809 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.43■□□□□ 0.86
YBX1P67809 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
YBX1P67809 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
YBX1P67809 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
YBX1P67809 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.42■□□□□ 0.86
YBX1P67809 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.42■□□□□ 0.86
YBX1P67809 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.42■□□□□ 0.86
YBX1P67809 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.42■□□□□ 0.86
YBX1P67809 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.42■□□□□ 0.86
YBX1P67809 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.42■□□□□ 0.86
YBX1P67809 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.42■□□□□ 0.86
YBX1P67809 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.42■□□□□ 0.86
YBX1P67809 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.42■□□□□ 0.86
YBX1P67809 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.42■□□□□ 0.86
YBX1P67809 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
YBX1P67809 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.42■□□□□ 0.86
YBX1P67809 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
YBX1P67809 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
YBX1P67809 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.41■□□□□ 0.86
YBX1P67809 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
YBX1P67809 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms