RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 NISCHQ9Y2I1 1504 aa41.52■■■■■ 4.24
NEK3-208ENST00000618534 SHROOM4Q9ULL8 1493 aa35.68■■■■□ 3.3
NEK3-208ENST00000618534 ZCCHC6Q5VYS8 1495 aaKnown RBP35.2■■■■□ 3.23
NEK3-208ENST00000618534 CCDC180Q9P1Z9 1646 aa35.15■■■■□ 3.22
NEK3-208ENST00000618534 SUPT5HO00267 1087 aaKnown RBP35.12■■■■□ 3.21
NEK3-208ENST00000618534 MYO15BQ96JP2 1530 aa34.34■■■■□ 3.09
NEK3-208ENST00000618534 DCAF8L2P0C7V8 631 aa34.31■■■■□ 3.08
NEK3-208ENST00000618534 CHIC1Q5VXU3 224 aa34.3■■■■□ 3.08
NEK3-208ENST00000618534 DCAF1Q9Y4B6 1507 aa34.04■■■■□ 3.04
NEK3-208ENST00000618534 HRCP23327 699 aa33.83■■■■□ 3.01
NEK3-208ENST00000618534 PCGF6Q9BYE7 350 aa33.59■■■□□ 2.97
NEK3-208ENST00000618534 LOC105371045A0A1W2PR82 267 aa33.32■■■□□ 2.92
NEK3-208ENST00000618534 ABCC9O60706 1549 aa33.31■■■□□ 2.92
NEK3-208ENST00000618534 PPARGC1BQ86YN6 1023 aaKnown RBP33.11■■■□□ 2.89
NEK3-208ENST00000618534 SCRIBQ14160 1630 aa33.05■■■□□ 2.88
NEK3-208ENST00000618534 RSF1Q96T23 1441 aaPredicted RBP32.99■■■□□ 2.87
NEK3-208ENST00000618534 TRIM26Q12899 539 aaPredicted RBP32.85■■■□□ 2.85
NEK3-208ENST00000618534 RB1CC1Q8TDY2 1594 aa32.76■■■□□ 2.83
NEK3-208ENST00000618534 TRIM41Q8WV44 630 aa32.66■■■□□ 2.82
NEK3-208ENST00000618534 FAM9AQ8IZU1 332 aaPredicted RBP32.45■■■□□ 2.78
NEK3-208ENST00000618534 CECR2Q9BXF3 1484 aa32.4■■■□□ 2.78
NEK3-208ENST00000618534 NACADO15069 1562 aa32.39■■■□□ 2.78
NEK3-208ENST00000618534 MROH2BQ7Z745 1585 aa32.33■■■□□ 2.77
NEK3-208ENST00000618534 ZEB1P37275 1124 aaPredicted RBP32.25■■■□□ 2.75
NEK3-208ENST00000618534 WIZO95785 1651 aa32.19■■■□□ 2.74
NEK3-208ENST00000618534 EHMT2Q96KQ7 1210 aa32.18■■■□□ 2.74
NEK3-208ENST00000618534 BAZ1AQ9NRL2 1556 aaPredicted RBP32■■■□□ 2.71
NEK3-208ENST00000618534 EIF4G1Q04637 1599 aaKnown RBP31.92■■■□□ 2.7
NEK3-208ENST00000618534 TOP2AP11388 1531 aaKnown RBP31.66■■■□□ 2.66
NEK3-208ENST00000618534 ABCC8Q09428 1581 aa31.6■■■□□ 2.65
NEK3-208ENST00000618534 SMARCA4P51532 1647 aa31.58■■■□□ 2.65
NEK3-208ENST00000618534 CCDC88BA6NC98 1476 aa31.54■■■□□ 2.64
NEK3-208ENST00000618534 SMARCA2P51531 1590 aa31.51■■■□□ 2.64
NEK3-208ENST00000618534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.5■■■□□ 2.63
NEK3-208ENST00000618534 CCER1Q8TC90 406 aaPredicted RBP31.43■■■□□ 2.62
NEK3-208ENST00000618534 UNC13AQ9UPW8 1703 aa31.42■■■□□ 2.62
NEK3-208ENST00000618534 SCAF1Q9H7N4 1312 aaKnown RBP31.4■■■□□ 2.62
NEK3-208ENST00000618534 WRNQ14191 1432 aaPredicted RBP eCLIP31.4■■■□□ 2.62
NEK3-208ENST00000618534 CEP162Q5TB80 1403 aa31.36■■■□□ 2.61
NEK3-208ENST00000618534 SOGA1O94964 1423 aa31.34■■■□□ 2.61
NEK3-208ENST00000618534 TNIKQ9UKE5 1360 aa31.26■■■□□ 2.59
NEK3-208ENST00000618534 TTBK1Q5TCY1 1321 aaPredicted RBP31.25■■■□□ 2.59
NEK3-208ENST00000618534 EEA1Q15075 1411 aa31.19■■■□□ 2.58
NEK3-208ENST00000618534 RUSC2Q8N2Y8 1516 aa31.18■■■□□ 2.58
NEK3-208ENST00000618534 CSRNP3Q8WYN3 585 aa31.15■■■□□ 2.58
NEK3-208ENST00000618534 UBTFP17480 764 aaKnown RBP31.06■■■□□ 2.56
NEK3-208ENST00000618534 PELP1Q8IZL8 1130 aaKnown RBP31.05■■■□□ 2.56
NEK3-208ENST00000618534 GOLGA3Q08378 1498 aa31.04■■■□□ 2.56
NEK3-208ENST00000618534 DIEXFQ68CQ4 756 aaKnown RBP30.99■■■□□ 2.55
NEK3-208ENST00000618534 BICRAQ9NZM4 1560 aa30.98■■■□□ 2.55
NEK3-208ENST00000618534 ACIN1Q9UKV3 1341 aaKnown RBP30.96■■■□□ 2.55
NEK3-208ENST00000618534 PABPN1Q86U42 306 aaKnown RBP eCLIP30.95■■■□□ 2.548e-7■■□□□ 13.3
NEK3-208ENST00000618534 PEG3Q9GZU2 1588 aa30.92■■■□□ 2.54
NEK3-208ENST00000618534 NEUROD1Q13562 356 aa30.91■■■□□ 2.54
NEK3-208ENST00000618534 SYNJ1O43426 1573 aa30.86■■■□□ 2.53
NEK3-208ENST00000618534 CEP164Q9UPV0 1460 aa30.81■■■□□ 2.52
NEK3-208ENST00000618534 KIF21BO75037 1637 aa30.8■■■□□ 2.52
NEK3-208ENST00000618534 CENPBP07199 599 aaPredicted RBP30.72■■■□□ 2.51
NEK3-208ENST00000618534 CLIP1P30622 1438 aa30.69■■■□□ 2.5
NEK3-208ENST00000618534 ZNF316A6NFI3 1004 aaPredicted RBP30.67■■■□□ 2.5
NEK3-208ENST00000618534 ATAD2BQ9ULI0 1458 aa30.66■■■□□ 2.5
NEK3-208ENST00000618534 GTF3C3Q9Y5Q9 886 aa30.62■■■□□ 2.49
NEK3-208ENST00000618534 VPS8Q8N3P4 1428 aa30.61■■■□□ 2.49
NEK3-208ENST00000618534 BAZ1BQ9UIG0 1483 aaKnown RBP30.6■■■□□ 2.49
NEK3-208ENST00000618534 HNRNPUL2Q1KMD3 747 aaKnown RBP30.6■■■□□ 2.49
NEK3-208ENST00000618534 RAPGEF2Q9Y4G8 1499 aa30.57■■■□□ 2.48
NEK3-208ENST00000618534 TOP2BQ02880 1626 aa30.42■■■□□ 2.46
NEK3-208ENST00000618534 APLP2Q06481 763 aa30.42■■■□□ 2.46
NEK3-208ENST00000618534 RANGAP1P46060 587 aaPredicted RBP30.39■■■□□ 2.46
NEK3-208ENST00000618534 BIVM-ERCC5R4GMW8 1640 aa30.32■■■□□ 2.44
NEK3-208ENST00000618534 YTHDC1Q96MU7 727 aaKnown RBP30.31■■■□□ 2.44
NEK3-208ENST00000618534 MIER1Q8N108 512 aa30.3■■■□□ 2.44
NEK3-208ENST00000618534 ERICH3Q5RHP9 1530 aa30.23■■■□□ 2.43
NEK3-208ENST00000618534 PRXQ9BXM0 1461 aa30.21■■■□□ 2.43
NEK3-208ENST00000618534 ARAP1Q96P48 1450 aa30.19■■■□□ 2.42
NEK3-208ENST00000618534 CUX1P39880 1505 aa30.07■■■□□ 2.4
NEK3-208ENST00000618534 DHX57Q6P158 1386 aaKnown RBP30.07■■■□□ 2.4
NEK3-208ENST00000618534 KANK4Q5T7N3 995 aaPredicted RBP30.04■■■□□ 2.4
NEK3-208ENST00000618534 CLSPNQ9HAW4 1339 aa30.04■■■□□ 2.4
NEK3-208ENST00000618534 HMGXB3Q12766 1538 aa30.02■■■□□ 2.4
NEK3-208ENST00000618534 KIF27Q86VH2 1401 aa29.98■■■□□ 2.39
NEK3-208ENST00000618534 NCAPD3P42695 1498 aa29.97■■■□□ 2.39
NEK3-208ENST00000618534 RRBP1Q9P2E9 1410 aaKnown RBP29.94■■■□□ 2.38
NEK3-208ENST00000618534 ARHGAP35Q9NRY4 1499 aa29.86■■■□□ 2.37
NEK3-208ENST00000618534 CFTRP13569 1480 aa29.85■■■□□ 2.37
NEK3-208ENST00000618534 CUX2O14529 1486 aa29.81■■■□□ 2.36
NEK3-208ENST00000618534 CCNB3Q8WWL7 1395 aa29.79■■■□□ 2.36
NEK3-208ENST00000618534 ITGAEP38570 1179 aa29.66■■■□□ 2.34
NEK3-208ENST00000618534 PRDM2Q13029 1718 aa29.66■■■□□ 2.34
NEK3-208ENST00000618534 IGF1RP08069 1367 aa29.62■■■□□ 2.33
NEK3-208ENST00000618534 TIAM1Q13009 1591 aa29.6■■■□□ 2.33
NEK3-208ENST00000618534 RAB3GAP2Q9H2M9 1393 aa29.57■■■□□ 2.32
NEK3-208ENST00000618534 MAP3K1Q13233 1512 aa29.55■■■□□ 2.32
NEK3-208ENST00000618534 MAPKBP1O60336 1514 aa29.54■■■□□ 2.32
NEK3-208ENST00000618534 MYT1Q01538 1121 aa29.51■■■□□ 2.31
NEK3-208ENST00000618534 CARMIL1Q5VZK9 1371 aa29.5■■■□□ 2.31
NEK3-208ENST00000618534 FGD5Q6ZNL6 1462 aa29.48■■■□□ 2.31
NEK3-208ENST00000618534 LRRC9Q6ZRR7 1453 aa29.47■■■□□ 2.31
NEK3-208ENST00000618534 SUPT16HQ9Y5B9 1047 aaKnown RBP29.44■■■□□ 2.3
NEK3-208ENST00000618534 CADPSQ9ULU8 1353 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms