Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RPAP1Q9BWH6 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC32.65■■■□□ 2.82
RPAP1Q9BWH6 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RPAP1Q9BWH6 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.63■■■□□ 2.81
RPAP1Q9BWH6 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.63■■■□□ 2.81
RPAP1Q9BWH6 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.63■■■□□ 2.81
RPAP1Q9BWH6 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
RPAP1Q9BWH6 MIR7108-201ENST00000614319 87 ntBASIC32.62■■■□□ 2.81
RPAP1Q9BWH6 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
RPAP1Q9BWH6 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
RPAP1Q9BWH6 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
RPAP1Q9BWH6 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC32.56■■■□□ 2.8
RPAP1Q9BWH6 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
RPAP1Q9BWH6 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
RPAP1Q9BWH6 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.53■■■□□ 2.8
RPAP1Q9BWH6 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.51■■■□□ 2.79
RPAP1Q9BWH6 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
RPAP1Q9BWH6 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
RPAP1Q9BWH6 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.5■■■□□ 2.79
RPAP1Q9BWH6 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC32.5■■■□□ 2.79
RPAP1Q9BWH6 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC32.5■■■□□ 2.79
RPAP1Q9BWH6 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
RPAP1Q9BWH6 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
RPAP1Q9BWH6 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
RPAP1Q9BWH6 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
RPAP1Q9BWH6 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
RPAP1Q9BWH6 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC32.46■■■□□ 2.79
RPAP1Q9BWH6 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
RPAP1Q9BWH6 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.45■■■□□ 2.78
RPAP1Q9BWH6 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC32.45■■■□□ 2.78
RPAP1Q9BWH6 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
RPAP1Q9BWH6 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
RPAP1Q9BWH6 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
RPAP1Q9BWH6 BOD1-206ENST00000480951 814 ntTSL 2 BASIC32.44■■■□□ 2.78
RPAP1Q9BWH6 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
RPAP1Q9BWH6 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
RPAP1Q9BWH6 RPS2-209ENST00000529806 993 ntTSL 3 BASIC32.43■■■□□ 2.78
RPAP1Q9BWH6 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.42■■■□□ 2.78
RPAP1Q9BWH6 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.42■■■□□ 2.78
RPAP1Q9BWH6 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
RPAP1Q9BWH6 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC32.41■■■□□ 2.78
RPAP1Q9BWH6 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
RPAP1Q9BWH6 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
RPAP1Q9BWH6 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
RPAP1Q9BWH6 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.4■■■□□ 2.78
RPAP1Q9BWH6 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.4■■■□□ 2.78
RPAP1Q9BWH6 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.4■■■□□ 2.78
RPAP1Q9BWH6 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32.39■■■□□ 2.78
RPAP1Q9BWH6 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.39■■■□□ 2.78
RPAP1Q9BWH6 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
RPAP1Q9BWH6 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
RPAP1Q9BWH6 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
RPAP1Q9BWH6 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
RPAP1Q9BWH6 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
RPAP1Q9BWH6 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
RPAP1Q9BWH6 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RPAP1Q9BWH6 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
RPAP1Q9BWH6 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.31■■■□□ 2.76
RPAP1Q9BWH6 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
RPAP1Q9BWH6 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.3■■■□□ 2.76
RPAP1Q9BWH6 ZNRF2P2-203ENST00000454624 420 ntBASIC32.3■■■□□ 2.76
RPAP1Q9BWH6 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
RPAP1Q9BWH6 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
RPAP1Q9BWH6 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC32.29■■■□□ 2.76
RPAP1Q9BWH6 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
RPAP1Q9BWH6 HLA-V-202ENST00000446817 847 ntBASIC32.29■■■□□ 2.76
RPAP1Q9BWH6 HGH1-207ENST00000628266 258 ntTSL 5 BASIC32.29■■■□□ 2.76
RPAP1Q9BWH6 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC32.27■■■□□ 2.76
RPAP1Q9BWH6 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.27■■■□□ 2.76
RPAP1Q9BWH6 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
RPAP1Q9BWH6 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC32.26■■■□□ 2.76
RPAP1Q9BWH6 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
RPAP1Q9BWH6 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.26■■■□□ 2.75
RPAP1Q9BWH6 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
RPAP1Q9BWH6 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC32.26■■■□□ 2.75
RPAP1Q9BWH6 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
RPAP1Q9BWH6 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
RPAP1Q9BWH6 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
RPAP1Q9BWH6 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
RPAP1Q9BWH6 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC32.23■■■□□ 2.75
RPAP1Q9BWH6 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.23■■■□□ 2.75
RPAP1Q9BWH6 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
RPAP1Q9BWH6 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC32.21■■■□□ 2.75
RPAP1Q9BWH6 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC32.2■■■□□ 2.75
RPAP1Q9BWH6 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.2■■■□□ 2.75
RPAP1Q9BWH6 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
RPAP1Q9BWH6 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
RPAP1Q9BWH6 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
RPAP1Q9BWH6 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
RPAP1Q9BWH6 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
RPAP1Q9BWH6 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC32.16■■■□□ 2.74
RPAP1Q9BWH6 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
RPAP1Q9BWH6 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
RPAP1Q9BWH6 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC32.14■■■□□ 2.73
RPAP1Q9BWH6 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.13■■■□□ 2.73
RPAP1Q9BWH6 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
RPAP1Q9BWH6 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC32.13■■■□□ 2.73
RPAP1Q9BWH6 DUX4L29-201ENST00000425409 679 ntBASIC32.12■■■□□ 2.73
RPAP1Q9BWH6 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC32.12■■■□□ 2.73
RPAP1Q9BWH6 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC32.11■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms