Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
COL21A1Q96P44 WASH5P-204ENST00000632292 975 ntBASIC25.01■■□□□ 1.59
COL21A1Q96P44 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.01■■□□□ 1.59
COL21A1Q96P44 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.01■■□□□ 1.59
COL21A1Q96P44 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
COL21A1Q96P44 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.98■■□□□ 1.59
COL21A1Q96P44 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
COL21A1Q96P44 AL391121.1-201ENST00000607967 1349 ntBASIC24.97■■□□□ 1.59
COL21A1Q96P44 CAHM-201ENST00000604200 896 ntBASIC24.97■■□□□ 1.59
COL21A1Q96P44 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL21A1Q96P44 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL21A1Q96P44 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL21A1Q96P44 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL21A1Q96P44 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL21A1Q96P44 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL21A1Q96P44 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.59
COL21A1Q96P44 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
COL21A1Q96P44 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
COL21A1Q96P44 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.95■■□□□ 1.59
COL21A1Q96P44 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
COL21A1Q96P44 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COL21A1Q96P44 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
COL21A1Q96P44 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL21A1Q96P44 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL21A1Q96P44 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL21A1Q96P44 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.94■■□□□ 1.58
COL21A1Q96P44 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL21A1Q96P44 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
COL21A1Q96P44 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
COL21A1Q96P44 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL21A1Q96P44 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL21A1Q96P44 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.91■■□□□ 1.58
COL21A1Q96P44 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL21A1Q96P44 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
COL21A1Q96P44 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL21A1Q96P44 EBPL-202ENST00000378268 680 ntTSL 3 BASIC24.9■■□□□ 1.58
COL21A1Q96P44 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC24.9■■□□□ 1.58
COL21A1Q96P44 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL21A1Q96P44 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL21A1Q96P44 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
COL21A1Q96P44 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.88■■□□□ 1.57
COL21A1Q96P44 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
COL21A1Q96P44 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC24.88■■□□□ 1.57
COL21A1Q96P44 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.88■■□□□ 1.57
COL21A1Q96P44 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
COL21A1Q96P44 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
COL21A1Q96P44 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
COL21A1Q96P44 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
COL21A1Q96P44 SUZ12P1-203ENST00000578195 985 ntBASIC24.86■■□□□ 1.57
COL21A1Q96P44 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
COL21A1Q96P44 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
COL21A1Q96P44 ST7-AS1-201ENST00000456775 1889 ntBASIC24.85■■□□□ 1.57
COL21A1Q96P44 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
COL21A1Q96P44 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
COL21A1Q96P44 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL21A1Q96P44 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL21A1Q96P44 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL21A1Q96P44 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
COL21A1Q96P44 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
COL21A1Q96P44 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
COL21A1Q96P44 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.82■■□□□ 1.56
COL21A1Q96P44 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.82■■□□□ 1.56
COL21A1Q96P44 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL21A1Q96P44 AC139426.1-201ENST00000568218 2529 ntBASIC24.79■■□□□ 1.56
COL21A1Q96P44 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL21A1Q96P44 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
COL21A1Q96P44 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL21A1Q96P44 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
COL21A1Q96P44 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
COL21A1Q96P44 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
COL21A1Q96P44 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
COL21A1Q96P44 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
COL21A1Q96P44 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
COL21A1Q96P44 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC24.75■■□□□ 1.55
COL21A1Q96P44 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
COL21A1Q96P44 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.74■■□□□ 1.55
COL21A1Q96P44 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
COL21A1Q96P44 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
COL21A1Q96P44 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.73■■□□□ 1.55
COL21A1Q96P44 AL135925.1-201ENST00000605920 1701 ntBASIC24.72■■□□□ 1.55
COL21A1Q96P44 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
COL21A1Q96P44 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
COL21A1Q96P44 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
COL21A1Q96P44 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
COL21A1Q96P44 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
COL21A1Q96P44 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
COL21A1Q96P44 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.7■■□□□ 1.54
COL21A1Q96P44 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
COL21A1Q96P44 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL21A1Q96P44 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
COL21A1Q96P44 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
COL21A1Q96P44 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL21A1Q96P44 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
COL21A1Q96P44 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
COL21A1Q96P44 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.67■■□□□ 1.54
COL21A1Q96P44 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.67■■□□□ 1.54
COL21A1Q96P44 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
COL21A1Q96P44 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
COL21A1Q96P44 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
COL21A1Q96P44 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms