Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
USP48Q86UV5 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
USP48Q86UV5 MIR639-201ENST00000384974 98 ntBASIC32.8■■■□□ 2.84
USP48Q86UV5 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC32.79■■■□□ 2.84
USP48Q86UV5 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
USP48Q86UV5 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC32.76■■■□□ 2.83
USP48Q86UV5 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC32.75■■■□□ 2.83
USP48Q86UV5 AC021231.2-201ENST00000594613 730 ntBASIC32.75■■■□□ 2.83
USP48Q86UV5 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC32.74■■■□□ 2.83
USP48Q86UV5 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
USP48Q86UV5 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC32.74■■■□□ 2.83
USP48Q86UV5 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
USP48Q86UV5 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
USP48Q86UV5 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.72■■■□□ 2.83
USP48Q86UV5 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC32.72■■■□□ 2.83
USP48Q86UV5 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
USP48Q86UV5 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC32.71■■■□□ 2.83
USP48Q86UV5 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.7■■■□□ 2.83
USP48Q86UV5 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.69■■■□□ 2.82
USP48Q86UV5 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
USP48Q86UV5 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
USP48Q86UV5 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
USP48Q86UV5 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
USP48Q86UV5 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.65■■■□□ 2.82
USP48Q86UV5 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
USP48Q86UV5 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC32.65■■■□□ 2.82
USP48Q86UV5 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
USP48Q86UV5 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC32.64■■■□□ 2.82
USP48Q86UV5 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
USP48Q86UV5 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
USP48Q86UV5 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC32.63■■■□□ 2.81
USP48Q86UV5 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
USP48Q86UV5 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC32.63■■■□□ 2.81
USP48Q86UV5 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
USP48Q86UV5 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
USP48Q86UV5 CALM3-209ENST00000597743 577 ntTSL 4 BASIC32.62■■■□□ 2.81
USP48Q86UV5 AC016575.1-201ENST00000607026 382 ntBASIC32.62■■■□□ 2.81
USP48Q86UV5 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
USP48Q86UV5 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
USP48Q86UV5 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
USP48Q86UV5 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
USP48Q86UV5 CIB2-204ENST00000557846 934 ntTSL 3 BASIC32.61■■■□□ 2.81
USP48Q86UV5 RNF166-209ENST00000567844 633 ntTSL 5 BASIC32.61■■■□□ 2.81
USP48Q86UV5 MIR3648-2-201ENST00000581792 180 ntBASIC32.61■■■□□ 2.81
USP48Q86UV5 HSD17B1P1-201ENST00000590052 955 ntBASIC32.61■■■□□ 2.81
USP48Q86UV5 MIR3648-1-201ENST00000615959 180 ntBASIC32.61■■■□□ 2.81
USP48Q86UV5 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
USP48Q86UV5 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC32.6■■■□□ 2.81
USP48Q86UV5 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
USP48Q86UV5 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
USP48Q86UV5 GDI1-215ENST00000630693 786 ntTSL 4 BASIC32.58■■■□□ 2.81
USP48Q86UV5 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC32.57■■■□□ 2.81
USP48Q86UV5 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
USP48Q86UV5 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
USP48Q86UV5 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
USP48Q86UV5 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC32.56■■■□□ 2.8
USP48Q86UV5 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC32.55■■■□□ 2.8
USP48Q86UV5 BRD4-212ENST00000630599 726 ntTSL 2 BASIC32.52■■■□□ 2.8
USP48Q86UV5 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC32.51■■■□□ 2.8
USP48Q86UV5 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
USP48Q86UV5 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
USP48Q86UV5 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC32.49■■■□□ 2.79
USP48Q86UV5 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
USP48Q86UV5 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USP48Q86UV5 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC32.48■■■□□ 2.79
USP48Q86UV5 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
USP48Q86UV5 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC32.47■■■□□ 2.79
USP48Q86UV5 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
USP48Q86UV5 MIR6090-201ENST00000622481 60 ntBASIC32.46■■■□□ 2.79
USP48Q86UV5 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
USP48Q86UV5 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
USP48Q86UV5 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
USP48Q86UV5 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
USP48Q86UV5 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
USP48Q86UV5 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
USP48Q86UV5 DUX4L11-201ENST00000611504 1267 ntBASIC32.41■■■□□ 2.78
USP48Q86UV5 DUX4L12-201ENST00000614593 1267 ntBASIC32.41■■■□□ 2.78
USP48Q86UV5 DUX4L14-201ENST00000621227 1267 ntBASIC32.41■■■□□ 2.78
USP48Q86UV5 AC108673.1-201ENST00000510422 1159 ntBASIC32.4■■■□□ 2.78
USP48Q86UV5 CR559946.2-201ENST00000623684 991 ntBASIC32.4■■■□□ 2.78
USP48Q86UV5 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.39■■■□□ 2.78
USP48Q86UV5 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC32.39■■■□□ 2.78
USP48Q86UV5 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
USP48Q86UV5 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC32.39■■■□□ 2.78
USP48Q86UV5 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
USP48Q86UV5 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC32.38■■■□□ 2.77
USP48Q86UV5 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC32.38■■■□□ 2.77
USP48Q86UV5 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC32.38■■■□□ 2.77
USP48Q86UV5 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC32.38■■■□□ 2.77
USP48Q86UV5 ABHD17AP3-201ENST00000503096 1137 ntBASIC32.37■■■□□ 2.77
USP48Q86UV5 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
USP48Q86UV5 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
USP48Q86UV5 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC32.36■■■□□ 2.77
USP48Q86UV5 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
USP48Q86UV5 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
USP48Q86UV5 AGPS-202ENST00000409888 815 ntTSL 4 BASIC32.34■■■□□ 2.77
USP48Q86UV5 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.34■■■□□ 2.77
USP48Q86UV5 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.34■■■□□ 2.77
USP48Q86UV5 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
USP48Q86UV5 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC32.33■■■□□ 2.77
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms