Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ABCB10P1-201ENST00000614297 2181 ntBASIC31.56■■■□□ 2.64
HMGB1P09429 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.55■■■□□ 2.64
HMGB1P09429 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.55■■■□□ 2.64
HMGB1P09429 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
HMGB1P09429 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
HMGB1P09429 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
HMGB1P09429 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
HMGB1P09429 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.53■■■□□ 2.64
HMGB1P09429 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.53■■■□□ 2.64
HMGB1P09429 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.52■■■□□ 2.64
HMGB1P09429 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
HMGB1P09429 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
HMGB1P09429 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
HMGB1P09429 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
HMGB1P09429 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
HMGB1P09429 ST7-AS1-201ENST00000456775 1889 ntBASIC31.5■■■□□ 2.63
HMGB1P09429 AL135925.1-201ENST00000605920 1701 ntBASIC31.49■■■□□ 2.63
HMGB1P09429 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
HMGB1P09429 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
HMGB1P09429 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.48■■■□□ 2.63
HMGB1P09429 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
HMGB1P09429 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
HMGB1P09429 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.47■■■□□ 2.63
HMGB1P09429 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
HMGB1P09429 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HMGB1P09429 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
HMGB1P09429 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HMGB1P09429 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
HMGB1P09429 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGB1P09429 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGB1P09429 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGB1P09429 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
HMGB1P09429 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
HMGB1P09429 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
HMGB1P09429 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.41■■■□□ 2.62
HMGB1P09429 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
HMGB1P09429 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
HMGB1P09429 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
HMGB1P09429 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
HMGB1P09429 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.38■■■□□ 2.61
HMGB1P09429 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.38■■■□□ 2.61
HMGB1P09429 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
HMGB1P09429 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HMGB1P09429 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HMGB1P09429 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
HMGB1P09429 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.35■■■□□ 2.61
HMGB1P09429 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGB1P09429 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
HMGB1P09429 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGB1P09429 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGB1P09429 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HMGB1P09429 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HMGB1P09429 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HMGB1P09429 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGB1P09429 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGB1P09429 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
HMGB1P09429 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGB1P09429 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.3■■■□□ 2.6
HMGB1P09429 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
HMGB1P09429 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGB1P09429 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGB1P09429 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
HMGB1P09429 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.28■■■□□ 2.6
HMGB1P09429 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
HMGB1P09429 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGB1P09429 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
HMGB1P09429 SUZ12P1-203ENST00000578195 985 ntBASIC31.26■■■□□ 2.59
HMGB1P09429 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.26■■■□□ 2.59
HMGB1P09429 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGB1P09429 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGB1P09429 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.25■■■□□ 2.59
HMGB1P09429 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGB1P09429 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGB1P09429 AC010864.1-201ENST00000609407 1511 ntBASIC31.22■■■□□ 2.59
HMGB1P09429 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
HMGB1P09429 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
HMGB1P09429 ABCB10P3-201ENST00000561950 2166 ntBASIC31.19■■■□□ 2.58
HMGB1P09429 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.19■■■□□ 2.58
HMGB1P09429 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
HMGB1P09429 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
HMGB1P09429 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
HMGB1P09429 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
HMGB1P09429 MIR762-201ENST00000390236 83 ntBASIC31.17■■■□□ 2.58
HMGB1P09429 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
HMGB1P09429 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
HMGB1P09429 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.16■■■□□ 2.58
HMGB1P09429 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.16■■■□□ 2.58
HMGB1P09429 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
HMGB1P09429 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.14■■■□□ 2.58
HMGB1P09429 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
HMGB1P09429 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms