Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.9■■□□□ 1.58
PDGFAP04085 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PDGFAP04085 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
PDGFAP04085 MIR4449-201ENST00000578365 66 ntBASIC24.88■■□□□ 1.57
PDGFAP04085 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PDGFAP04085 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PDGFAP04085 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDGFAP04085 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PDGFAP04085 AL161658.1-201ENST00000623641 1967 ntBASIC24.85■■□□□ 1.57
PDGFAP04085 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC24.84■■□□□ 1.57
PDGFAP04085 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.84■■□□□ 1.57
PDGFAP04085 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.84■■□□□ 1.57
PDGFAP04085 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.84■■□□□ 1.57
PDGFAP04085 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PDGFAP04085 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PDGFAP04085 MIR639-201ENST00000384974 98 ntBASIC24.83■■□□□ 1.57
PDGFAP04085 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.82■■□□□ 1.56
PDGFAP04085 MIR6090-201ENST00000622481 60 ntBASIC24.82■■□□□ 1.56
PDGFAP04085 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PDGFAP04085 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC24.81■■□□□ 1.56
PDGFAP04085 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PDGFAP04085 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PDGFAP04085 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PDGFAP04085 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDGFAP04085 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC24.78■■□□□ 1.56
PDGFAP04085 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PDGFAP04085 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.77■■□□□ 1.56
PDGFAP04085 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
PDGFAP04085 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PDGFAP04085 AC016575.1-201ENST00000607026 382 ntBASIC24.76■■□□□ 1.55
PDGFAP04085 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.76■■□□□ 1.55
PDGFAP04085 MIR3648-2-201ENST00000581792 180 ntBASIC24.75■■□□□ 1.55
PDGFAP04085 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.75■■□□□ 1.55
PDGFAP04085 MIR3648-1-201ENST00000615959 180 ntBASIC24.75■■□□□ 1.55
PDGFAP04085 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDGFAP04085 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDGFAP04085 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PDGFAP04085 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
PDGFAP04085 AC108673.1-201ENST00000510422 1159 ntBASIC24.74■■□□□ 1.55
PDGFAP04085 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.74■■□□□ 1.55
PDGFAP04085 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.73■■□□□ 1.55
PDGFAP04085 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
PDGFAP04085 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
PDGFAP04085 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
PDGFAP04085 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.71■■□□□ 1.55
PDGFAP04085 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.71■■□□□ 1.55
PDGFAP04085 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PDGFAP04085 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
PDGFAP04085 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC24.7■■□□□ 1.54
PDGFAP04085 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.7■■□□□ 1.54
PDGFAP04085 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PDGFAP04085 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.7■■□□□ 1.54
PDGFAP04085 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PDGFAP04085 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDGFAP04085 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PDGFAP04085 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PDGFAP04085 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PDGFAP04085 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.67■■□□□ 1.54
PDGFAP04085 CR559946.2-201ENST00000623684 991 ntBASIC24.67■■□□□ 1.54
PDGFAP04085 DUX4L11-201ENST00000611504 1267 ntBASIC24.66■■□□□ 1.54
PDGFAP04085 DUX4L12-201ENST00000614593 1267 ntBASIC24.66■■□□□ 1.54
PDGFAP04085 DUX4L14-201ENST00000621227 1267 ntBASIC24.66■■□□□ 1.54
PDGFAP04085 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDGFAP04085 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.65■■□□□ 1.54
PDGFAP04085 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.65■■□□□ 1.54
PDGFAP04085 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
PDGFAP04085 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC24.63■■□□□ 1.53
PDGFAP04085 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PDGFAP04085 HSD17B1P1-201ENST00000590052 955 ntBASIC24.63■■□□□ 1.53
PDGFAP04085 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PDGFAP04085 LINC01971-201ENST00000617888 1048 ntBASIC24.63■■□□□ 1.53
PDGFAP04085 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
PDGFAP04085 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PDGFAP04085 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PDGFAP04085 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
PDGFAP04085 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
PDGFAP04085 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PDGFAP04085 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PDGFAP04085 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PDGFAP04085 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PDGFAP04085 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.6■■□□□ 1.53
PDGFAP04085 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PDGFAP04085 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.59■■□□□ 1.53
PDGFAP04085 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.59■■□□□ 1.53
PDGFAP04085 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.59■■□□□ 1.53
PDGFAP04085 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PDGFAP04085 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PDGFAP04085 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC24.58■■□□□ 1.52
PDGFAP04085 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
PDGFAP04085 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PDGFAP04085 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC24.57■■□□□ 1.52
PDGFAP04085 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.56■■□□□ 1.52
PDGFAP04085 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC24.56■■□□□ 1.52
PDGFAP04085 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.55■■□□□ 1.52
PDGFAP04085 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
PDGFAP04085 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PDGFAP04085 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC24.55■■□□□ 1.52
PDGFAP04085 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.54■■□□□ 1.52
PDGFAP04085 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.54■■□□□ 1.52
PDGFAP04085 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms