Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 AC026366.1-201ENST00000488803 879 ntBASIC20.17■□□□□ 0.82
COL28A1Q2UY09 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 OR10C1-204ENST00000622521 1039 ntBASIC20.17■□□□□ 0.82
COL28A1Q2UY09 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL28A1Q2UY09 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 UNC93B5-201ENST00000530315 699 ntBASIC20.16■□□□□ 0.82
COL28A1Q2UY09 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 AL359736.2-201ENST00000621992 437 ntBASIC20.16■□□□□ 0.82
COL28A1Q2UY09 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL28A1Q2UY09 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 AC016405.3-201ENST00000607710 860 ntBASIC20.15■□□□□ 0.82
COL28A1Q2UY09 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 AC008694.1-202ENST00000636953 945 ntBASIC20.15■□□□□ 0.82
COL28A1Q2UY09 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
COL28A1Q2UY09 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL28A1Q2UY09 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL28A1Q2UY09 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.14■□□□□ 0.81
COL28A1Q2UY09 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL28A1Q2UY09 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL28A1Q2UY09 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 AL117328.2-201ENST00000624617 1940 ntBASIC20.12■□□□□ 0.81
COL28A1Q2UY09 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL28A1Q2UY09 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms