Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CKS1BP61024 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC14.61□□□□□ -0.07
CKS1BP61024 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC14.61□□□□□ -0.07
CKS1BP61024 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CKS1BP61024 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CKS1BP61024 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CKS1BP61024 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 MIR4508-201ENST00000584178 70 ntBASIC14.6□□□□□ -0.07
CKS1BP61024 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC14.6□□□□□ -0.07
CKS1BP61024 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CKS1BP61024 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CKS1BP61024 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC14.6□□□□□ -0.07
CKS1BP61024 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CKS1BP61024 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC14.59□□□□□ -0.07
CKS1BP61024 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC14.59□□□□□ -0.07
CKS1BP61024 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC14.59□□□□□ -0.07
CKS1BP61024 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC14.59□□□□□ -0.07
CKS1BP61024 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.59□□□□□ -0.07
CKS1BP61024 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CKS1BP61024 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC14.58□□□□□ -0.07
CKS1BP61024 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CKS1BP61024 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CKS1BP61024 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CKS1BP61024 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CKS1BP61024 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CKS1BP61024 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CKS1BP61024 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CKS1BP61024 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CKS1BP61024 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
CKS1BP61024 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CKS1BP61024 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CKS1BP61024 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.57□□□□□ -0.08
CKS1BP61024 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC14.57□□□□□ -0.08
CKS1BP61024 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CKS1BP61024 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 FZD10-202ENST00000539839 3282 ntBASIC14.57□□□□□ -0.08
CKS1BP61024 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 LINC01521-201ENST00000504184 1943 ntBASIC14.57□□□□□ -0.08
CKS1BP61024 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.57□□□□□ -0.08
CKS1BP61024 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC14.57□□□□□ -0.08
CKS1BP61024 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CKS1BP61024 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC14.57□□□□□ -0.08
CKS1BP61024 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
CKS1BP61024 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CKS1BP61024 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CKS1BP61024 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CKS1BP61024 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CKS1BP61024 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms