Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.97■□□□□ 0.79
CPSF4O95639 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.97■□□□□ 0.79
CPSF4O95639 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.97■□□□□ 0.79
CPSF4O95639 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.97■□□□□ 0.79
CPSF4O95639 AC133561.4-201ENST00000566112 224 ntBASIC19.97■□□□□ 0.79
CPSF4O95639 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.97■□□□□ 0.79
CPSF4O95639 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.97■□□□□ 0.79
CPSF4O95639 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.97■□□□□ 0.79
CPSF4O95639 AC008764.7-201ENST00000593779 1081 ntBASIC19.97■□□□□ 0.79
CPSF4O95639 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CPSF4O95639 AC135279.3-201ENST00000610945 1311 ntBASIC19.97■□□□□ 0.79
CPSF4O95639 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CPSF4O95639 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.96■□□□□ 0.79
CPSF4O95639 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.96■□□□□ 0.79
CPSF4O95639 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.96■□□□□ 0.79
CPSF4O95639 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CPSF4O95639 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.96■□□□□ 0.79
CPSF4O95639 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.96■□□□□ 0.79
CPSF4O95639 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.96■□□□□ 0.79
CPSF4O95639 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.96■□□□□ 0.79
CPSF4O95639 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.96■□□□□ 0.79
CPSF4O95639 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.96■□□□□ 0.79
CPSF4O95639 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CPSF4O95639 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 AL157384.1-201ENST00000445995 2473 ntBASIC19.96■□□□□ 0.79
CPSF4O95639 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CPSF4O95639 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4O95639 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CPSF4O95639 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4O95639 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.95■□□□□ 0.78
CPSF4O95639 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CPSF4O95639 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CPSF4O95639 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CPSF4O95639 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.95■□□□□ 0.78
CPSF4O95639 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CPSF4O95639 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CPSF4O95639 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4O95639 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4O95639 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.94■□□□□ 0.78
CPSF4O95639 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4O95639 IGHV3-19-201ENST00000521488 291 ntBASIC19.94■□□□□ 0.78
CPSF4O95639 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.94■□□□□ 0.78
CPSF4O95639 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4O95639 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.94■□□□□ 0.78
CPSF4O95639 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.94■□□□□ 0.78
CPSF4O95639 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.94■□□□□ 0.78
CPSF4O95639 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4O95639 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CPSF4O95639 AC008406.3-201ENST00000620001 1374 ntBASIC19.94■□□□□ 0.78
CPSF4O95639 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CPSF4O95639 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
CPSF4O95639 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4O95639 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.93■□□□□ 0.78
CPSF4O95639 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CPSF4O95639 AC096631.2-201ENST00000436136 790 ntBASIC19.93■□□□□ 0.78
CPSF4O95639 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.93■□□□□ 0.78
CPSF4O95639 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
CPSF4O95639 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
CPSF4O95639 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CPSF4O95639 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CPSF4O95639 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CPSF4O95639 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms