Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH1Q08174 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH1Q08174 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.35■□□□□ 0.85
PCDH1Q08174 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH1Q08174 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.35■□□□□ 0.85
PCDH1Q08174 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.35■□□□□ 0.85
PCDH1Q08174 AC053503.5-201ENST00000601508 636 ntBASIC20.35■□□□□ 0.85
PCDH1Q08174 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH1Q08174 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH1Q08174 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH1Q08174 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH1Q08174 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDH1Q08174 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.35■□□□□ 0.85
PCDH1Q08174 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDH1Q08174 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PCDH1Q08174 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDH1Q08174 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDH1Q08174 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDH1Q08174 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.34■□□□□ 0.85
PCDH1Q08174 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDH1Q08174 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDH1Q08174 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDH1Q08174 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.33■□□□□ 0.85
PCDH1Q08174 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
PCDH1Q08174 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH1Q08174 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH1Q08174 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
PCDH1Q08174 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH1Q08174 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH1Q08174 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH1Q08174 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PCDH1Q08174 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.33■□□□□ 0.84
PCDH1Q08174 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDH1Q08174 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDH1Q08174 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PCDH1Q08174 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH1Q08174 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.32■□□□□ 0.84
PCDH1Q08174 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.32■□□□□ 0.84
PCDH1Q08174 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH1Q08174 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.32■□□□□ 0.84
PCDH1Q08174 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PCDH1Q08174 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDH1Q08174 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDH1Q08174 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH1Q08174 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH1Q08174 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDH1Q08174 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH1Q08174 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH1Q08174 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH1Q08174 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PCDH1Q08174 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH1Q08174 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDH1Q08174 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.31■□□□□ 0.84
PCDH1Q08174 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.31■□□□□ 0.84
PCDH1Q08174 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.31■□□□□ 0.84
PCDH1Q08174 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PCDH1Q08174 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.31■□□□□ 0.84
PCDH1Q08174 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
PCDH1Q08174 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.3■□□□□ 0.84
PCDH1Q08174 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.3■□□□□ 0.84
PCDH1Q08174 AC123595.1-201ENST00000440769 1046 ntBASIC20.3■□□□□ 0.84
PCDH1Q08174 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH1Q08174 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PCDH1Q08174 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
PCDH1Q08174 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH1Q08174 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.3■□□□□ 0.84
PCDH1Q08174 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH1Q08174 AL049796.1-201ENST00000565336 1766 ntBASIC20.3■□□□□ 0.84
PCDH1Q08174 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDH1Q08174 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 AL137060.1-201ENST00000618151 2648 ntBASIC20.3■□□□□ 0.84
PCDH1Q08174 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDH1Q08174 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
PCDH1Q08174 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDH1Q08174 MIR6084-201ENST00000622012 110 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms