Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMS3P0CW19 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMS3P0CW19 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMS3P0CW19 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMS3P0CW19 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMS3P0CW19 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMS3P0CW19 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMS3P0CW19 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
LIMS3P0CW19 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMS3P0CW19 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMS3P0CW19 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
LIMS3P0CW19 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMS3P0CW19 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
LIMS3P0CW19 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMS3P0CW19 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMS3P0CW19 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 AC010525.1-201ENST00000585559 441 ntBASIC18.72■□□□□ 0.59
LIMS3P0CW19 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMS3P0CW19 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMS3P0CW19 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 AFG3L1P-217ENST00000557444 2447 ntBASIC18.71■□□□□ 0.59
LIMS3P0CW19 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.71■□□□□ 0.59
LIMS3P0CW19 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMS3P0CW19 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 PCDHAC2-203ENST00000615316 3011 ntBASIC18.7■□□□□ 0.58
LIMS3P0CW19 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms