RNA–Protein interactions for RNA: ENST00000336219.3

CDCA4-201, Transcript of cell division cycle associated 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDCA4, Length 2,513 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA4-201ENST00000336219 NISCHQ9Y2I1 1504 aa41.08■■■■■ 4.17
CDCA4-201ENST00000336219 CCDC180Q9P1Z9 1646 aa35■■■■□ 3.19
CDCA4-201ENST00000336219 SHROOM4Q9ULL8 1493 aa34.89■■■■□ 3.18
CDCA4-201ENST00000336219 ZCCHC6Q5VYS8 1495 aaKnown RBP34.79■■■■□ 3.16
CDCA4-201ENST00000336219 SUPT5HO00267 1087 aaKnown RBP34.25■■■■□ 3.07
CDCA4-201ENST00000336219 DCAF8L2P0C7V8 631 aa33.81■■■■□ 3
CDCA4-201ENST00000336219 DCAF1Q9Y4B6 1507 aa33.79■■■■□ 3
CDCA4-201ENST00000336219 CHIC1Q5VXU3 224 aa33.41■■■□□ 2.94
CDCA4-201ENST00000336219 MYO15BQ96JP2 1530 aa33.4■■■□□ 2.94
CDCA4-201ENST00000336219 HRCP23327 699 aa33.15■■■□□ 2.9
CDCA4-201ENST00000336219 PCGF6Q9BYE7 350 aa32.92■■■□□ 2.86
CDCA4-201ENST00000336219 ABCC9O60706 1549 aa32.86■■■□□ 2.85
CDCA4-201ENST00000336219 SCRIBQ14160 1630 aa32.68■■■□□ 2.82
CDCA4-201ENST00000336219 PPARGC1BQ86YN6 1023 aaKnown RBP32.65■■■□□ 2.82
CDCA4-201ENST00000336219 RSF1Q96T23 1441 aaPredicted RBP32.5■■■□□ 2.79
CDCA4-201ENST00000336219 LOC105371045A0A1W2PR82 267 aa32.5■■■□□ 2.79
CDCA4-201ENST00000336219 NACADO15069 1562 aa32.28■■■□□ 2.76
CDCA4-201ENST00000336219 RB1CC1Q8TDY2 1594 aa32.22■■■□□ 2.75
CDCA4-201ENST00000336219 CECR2Q9BXF3 1484 aa31.98■■■□□ 2.71
CDCA4-201ENST00000336219 TRIM26Q12899 539 aaPredicted RBP31.97■■■□□ 2.71
CDCA4-201ENST00000336219 TRIM41Q8WV44 630 aa31.94■■■□□ 2.7
CDCA4-201ENST00000336219 MROH2BQ7Z745 1585 aa31.91■■■□□ 2.7
CDCA4-201ENST00000336219 WIZO95785 1651 aa31.77■■■□□ 2.68
CDCA4-201ENST00000336219 BAZ1AQ9NRL2 1556 aaPredicted RBP31.63■■■□□ 2.65
CDCA4-201ENST00000336219 FAM9AQ8IZU1 332 aaPredicted RBP31.61■■■□□ 2.65
CDCA4-201ENST00000336219 EHMT2Q96KQ7 1210 aa31.47■■■□□ 2.63
CDCA4-201ENST00000336219 EIF4G1Q04637 1599 aaKnown RBP31.45■■■□□ 2.63
CDCA4-201ENST00000336219 ZEB1P37275 1124 aaPredicted RBP31.36■■■□□ 2.61
CDCA4-201ENST00000336219 UNC13AQ9UPW8 1703 aa31.32■■■□□ 2.61
CDCA4-201ENST00000336219 TOP2AP11388 1531 aaKnown RBP31.3■■■□□ 2.6
CDCA4-201ENST00000336219 SMARCA4P51532 1647 aa31.3■■■□□ 2.6
CDCA4-201ENST00000336219 SMARCA2P51531 1590 aa31.12■■■□□ 2.57
CDCA4-201ENST00000336219 CCDC88BA6NC98 1476 aa31.11■■■□□ 2.57
CDCA4-201ENST00000336219 ABCC8Q09428 1581 aa31.05■■■□□ 2.56
CDCA4-201ENST00000336219 SCAF1Q9H7N4 1312 aaKnown RBP31■■■□□ 2.55
CDCA4-201ENST00000336219 BICRAQ9NZM4 1560 aa30.87■■■□□ 2.53
CDCA4-201ENST00000336219 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.8■■■□□ 2.52
CDCA4-201ENST00000336219 SOGA1O94964 1423 aa30.74■■■□□ 2.51
CDCA4-201ENST00000336219 PEG3Q9GZU2 1588 aa30.74■■■□□ 2.51
CDCA4-201ENST00000336219 WRNQ14191 1432 aaPredicted RBP eCLIP30.71■■■□□ 2.51
CDCA4-201ENST00000336219 PABPN1Q86U42 306 aaKnown RBP eCLIP30.71■■■□□ 2.51
CDCA4-201ENST00000336219 EEA1Q15075 1411 aa30.69■■■□□ 2.5
CDCA4-201ENST00000336219 CEP162Q5TB80 1403 aa30.66■■■□□ 2.5
CDCA4-201ENST00000336219 CCER1Q8TC90 406 aaPredicted RBP30.65■■■□□ 2.5
CDCA4-201ENST00000336219 PELP1Q8IZL8 1130 aaKnown RBP30.64■■■□□ 2.49
CDCA4-201ENST00000336219 TNIKQ9UKE5 1360 aa30.63■■■□□ 2.49
CDCA4-201ENST00000336219 RUSC2Q8N2Y8 1516 aa30.59■■■□□ 2.49
CDCA4-201ENST00000336219 CSRNP3Q8WYN3 585 aa30.57■■■□□ 2.48
CDCA4-201ENST00000336219 TTBK1Q5TCY1 1321 aaPredicted RBP30.56■■■□□ 2.48
CDCA4-201ENST00000336219 GOLGA3Q08378 1498 aa30.46■■■□□ 2.47
CDCA4-201ENST00000336219 NEUROD1Q13562 356 aa30.43■■■□□ 2.46
CDCA4-201ENST00000336219 ATAD2BQ9ULI0 1458 aa30.43■■■□□ 2.46
CDCA4-201ENST00000336219 ACIN1Q9UKV3 1341 aaKnown RBP30.41■■■□□ 2.46
CDCA4-201ENST00000336219 SYNJ1O43426 1573 aa30.41■■■□□ 2.46
CDCA4-201ENST00000336219 UBTFP17480 764 aaKnown RBP30.4■■■□□ 2.46
CDCA4-201ENST00000336219 BAZ1BQ9UIG0 1483 aaKnown RBP30.34■■■□□ 2.45
CDCA4-201ENST00000336219 DIEXFQ68CQ4 756 aaKnown RBP30.32■■■□□ 2.44
CDCA4-201ENST00000336219 KIF21BO75037 1637 aa30.3■■■□□ 2.44
CDCA4-201ENST00000336219 CEP164Q9UPV0 1460 aa30.28■■■□□ 2.44
CDCA4-201ENST00000336219 GTF3C3Q9Y5Q9 886 aa30.17■■■□□ 2.42
CDCA4-201ENST00000336219 CLIP1P30622 1438 aa30.08■■■□□ 2.41
CDCA4-201ENST00000336219 TOP2BQ02880 1626 aa30.06■■■□□ 2.4
CDCA4-201ENST00000336219 CENPBP07199 599 aaPredicted RBP30.05■■■□□ 2.4
CDCA4-201ENST00000336219 RAPGEF2Q9Y4G8 1499 aa30.02■■■□□ 2.4
CDCA4-201ENST00000336219 VPS8Q8N3P4 1428 aa29.99■■■□□ 2.39
CDCA4-201ENST00000336219 BIVM-ERCC5R4GMW8 1640 aa29.98■■■□□ 2.39
CDCA4-201ENST00000336219 ZNF316A6NFI3 1004 aaPredicted RBP29.9■■■□□ 2.38
CDCA4-201ENST00000336219 HMGXB3Q12766 1538 aa29.89■■■□□ 2.37
CDCA4-201ENST00000336219 NCAPD3P42695 1498 aa29.84■■■□□ 2.37
CDCA4-201ENST00000336219 YTHDC1Q96MU7 727 aaKnown RBP29.83■■■□□ 2.37
CDCA4-201ENST00000336219 ERICH3Q5RHP9 1530 aa29.8■■■□□ 2.36
CDCA4-201ENST00000336219 HNRNPUL2Q1KMD3 747 aaKnown RBP29.79■■■□□ 2.36
CDCA4-201ENST00000336219 APLP2Q06481 763 aa29.76■■■□□ 2.35
CDCA4-201ENST00000336219 PRXQ9BXM0 1461 aa29.76■■■□□ 2.35
CDCA4-201ENST00000336219 CUX1P39880 1505 aa29.72■■■□□ 2.35
CDCA4-201ENST00000336219 RANGAP1P46060 587 aaPredicted RBP29.69■■■□□ 2.34
CDCA4-201ENST00000336219 MIER1Q8N108 512 aa29.67■■■□□ 2.34
CDCA4-201ENST00000336219 CFTRP13569 1480 aa29.62■■■□□ 2.33
CDCA4-201ENST00000336219 ARAP1Q96P48 1450 aa29.62■■■□□ 2.33
CDCA4-201ENST00000336219 KIF27Q86VH2 1401 aa29.58■■■□□ 2.33
CDCA4-201ENST00000336219 PRDM2Q13029 1718 aa29.52■■■□□ 2.32
CDCA4-201ENST00000336219 KANK4Q5T7N3 995 aaPredicted RBP29.38■■■□□ 2.29
CDCA4-201ENST00000336219 ARHGAP35Q9NRY4 1499 aa29.34■■■□□ 2.29
CDCA4-201ENST00000336219 RRBP1Q9P2E9 1410 aaKnown RBP29.32■■■□□ 2.28
CDCA4-201ENST00000336219 CLSPNQ9HAW4 1339 aa29.31■■■□□ 2.28
CDCA4-201ENST00000336219 DHX57Q6P158 1386 aaKnown RBP29.29■■■□□ 2.28
CDCA4-201ENST00000336219 CUX2O14529 1486 aa29.26■■■□□ 2.27
CDCA4-201ENST00000336219 CADPSQ9ULU8 1353 aa29.24■■■□□ 2.27
CDCA4-201ENST00000336219 IGF1RP08069 1367 aa29.23■■■□□ 2.27
CDCA4-201ENST00000336219 FGD5Q6ZNL6 1462 aa29.16■■■□□ 2.26
CDCA4-201ENST00000336219 CCNB3Q8WWL7 1395 aa29.15■■■□□ 2.26
CDCA4-201ENST00000336219 MYT1Q01538 1121 aa29.12■■■□□ 2.25
CDCA4-201ENST00000336219 CARMIL1Q5VZK9 1371 aa29.1■■■□□ 2.25
CDCA4-201ENST00000336219 MAP3K1Q13233 1512 aa29.08■■■□□ 2.25
CDCA4-201ENST00000336219 TIAM1Q13009 1591 aa29.08■■■□□ 2.25
CDCA4-201ENST00000336219 CC2D2AQ9P2K1 1620 aa29.03■■■□□ 2.24
CDCA4-201ENST00000336219 FANCD2Q9BXW9 1451 aa28.97■■■□□ 2.23
CDCA4-201ENST00000336219 LRRC9Q6ZRR7 1453 aa28.93■■■□□ 2.22
CDCA4-201ENST00000336219 ITGAEP38570 1179 aa28.9■■■□□ 2.22
CDCA4-201ENST00000336219 FHAD1B1AJZ9 1412 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms