Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 FUBP1-201ENST00000294623 2201 ntTSL 1 (best)17.29■□□□□ 0.363e-7■■■□□ 15.7
U2AF1Q01081 FUBP1-210ENST00000488814 612 ntTSL 38.62□□□□□ -1.033e-7■■■□□ 15.7
U2AF1Q01081 SUGP2-209ENST00000597280 814 ntTSL 318.52■□□□□ 0.563e-8■■■□□ 15.7
U2AF1Q01081 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.443e-8■■■□□ 15.7
U2AF1Q01081 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.433e-8■■■□□ 15.7
U2AF1Q01081 SUGP2-213ENST00000600239 5565 ntTSL 217.23■□□□□ 0.353e-8■■■□□ 15.7
U2AF1Q01081 WAC-212ENST00000448193 506 ntTSL 235.73■■■■□ 3.313e-7■■■□□ 15.7
U2AF1Q01081 WAC-220ENST00000532233 543 ntTSL 419.37■□□□□ 0.693e-7■■■□□ 15.7
U2AF1Q01081 WAC-218ENST00000528491 507 ntTSL 419.01■□□□□ 0.633e-7■■■□□ 15.7
U2AF1Q01081 WAC-217ENST00000526722 585 ntTSL 419.01■□□□□ 0.633e-7■■■□□ 15.7
U2AF1Q01081 WAC-219ENST00000530865 468 ntTSL 25.57□□□□□ -1.523e-7■■■□□ 15.7
U2AF1Q01081 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC9.09□□□□□ -0.951e-323■■■□□ 15.7
U2AF1Q01081 USP34-221ENST00000494867 795 ntTSL 315.34■□□□□ 0.052e-6■■■□□ 15.6
U2AF1Q01081 SNHG14-216ENST00000551938 1108 ntTSL 28.1□□□□□ -1.112e-6■■■□□ 15.6
U2AF1Q01081 WDR43-206ENST00000466067 628 ntTSL 27.51□□□□□ -1.212e-6■■■□□ 15.6
U2AF1Q01081 USP34-215ENST00000484179 927 ntTSL 35.98□□□□□ -1.452e-6■■■□□ 15.6
U2AF1Q01081 ADGRG6-211ENST00000538281 591 ntTSL 35.48□□□□□ -1.533e-10■■■□□ 15.6
U2AF1Q01081 ADGRG6-212ENST00000540208 652 ntTSL 35.29□□□□□ -1.563e-10■■■□□ 15.6
U2AF1Q01081 DDB2-216ENST00000622878 556 ntTSL 421.41■■□□□ 1.024e-6■■■□□ 15.6
U2AF1Q01081 DDB2-215ENST00000622090 580 ntTSL 516.63■□□□□ 0.254e-6■■■□□ 15.6
U2AF1Q01081 DDB2-205ENST00000610805 793 ntTSL 515.82■□□□□ 0.124e-6■■■□□ 15.6
U2AF1Q01081 DDB2-208ENST00000614825 852 ntTSL 315.55■□□□□ 0.084e-6■■■□□ 15.6
U2AF1Q01081 DDB2-210ENST00000615695 897 ntTSL 214.06□□□□□ -0.164e-6■■■□□ 15.6
U2AF1Q01081 CSNK1A1-201ENST00000261798 6067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.242e-6■■■□□ 15.6
U2AF1Q01081 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.512e-11■■■□□ 15.6
U2AF1Q01081 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.272e-11■■■□□ 15.6
U2AF1Q01081 TRIM25-205ENST00000572021 1555 ntTSL 1 (best)15.95■□□□□ 0.142e-11■■■□□ 15.6
U2AF1Q01081 TXLNGY-206ENST00000459719 2098 ntTSL 220.66■□□□□ 0.91e-11■■■□□ 15.5
U2AF1Q01081 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC17.58■□□□□ 0.41e-11■■■□□ 15.5
U2AF1Q01081 TXLNGY-205ENST00000447520 832 ntTSL 217.58■□□□□ 0.41e-11■■■□□ 15.5
U2AF1Q01081 TXLNGY-208ENST00000538014 2018 ntTSL 213.37□□□□□ -0.271e-11■■■□□ 15.5
U2AF1Q01081 TXLNGY-204ENST00000447202 2761 ntTSL 210.43□□□□□ -0.741e-11■■■□□ 15.5
U2AF1Q01081 TRIM24-206ENST00000497516 1515 ntTSL 519.28■□□□□ 0.682e-8■■■□□ 15.5
U2AF1Q01081 TRIM24-203ENST00000464210 545 ntTSL 47.35□□□□□ -1.232e-8■■■□□ 15.5
U2AF1Q01081 CYB5B-204ENST00000515314 1658 ntTSL 5 BASIC15.11■□□□□ 0.019e-7■■■□□ 15.5
U2AF1Q01081 CYB5B-203ENST00000514123 2492 ntTSL 1 (best)13.22□□□□□ -0.299e-7■■■□□ 15.5
U2AF1Q01081 CYB5B-202ENST00000512062 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.569e-7■■■□□ 15.5
U2AF1Q01081 CYB5B-205ENST00000561792 823 ntTSL 5 BASIC10.68□□□□□ -0.79e-7■■■□□ 15.5
U2AF1Q01081 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC9.67□□□□□ -0.869e-7■■■□□ 15.5
U2AF1Q01081 CYB5B-206ENST00000568237 577 ntTSL 55.73□□□□□ -1.499e-7■■■□□ 15.5
U2AF1Q01081 CYB5B-207ENST00000568342 648 ntTSL 54.83□□□□□ -1.649e-7■■■□□ 15.5
U2AF1Q01081 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC18.19■□□□□ 0.51e-10■■■□□ 15.5
U2AF1Q01081 CCT6P3-202ENST00000426828 2238 ntTSL 1 (best) BASIC15.17■□□□□ 0.021e-10■■■□□ 15.5
U2AF1Q01081 CCT6P3-203ENST00000452026 1383 ntBASIC15.14■□□□□ 0.011e-10■■■□□ 15.5
U2AF1Q01081 SMCHD1-203ENST00000577880 4951 ntTSL 23.74□□□□□ -1.813e-6■■■□□ 15.5
U2AF1Q01081 SMCHD1-211ENST00000584897 4143 ntTSL 22.34□□□□□ -2.043e-6■■■□□ 15.5
U2AF1Q01081 NXF1-203ENST00000526163 569 ntTSL 415.24■□□□□ 0.035e-8■■■□□ 15.5
U2AF1Q01081 RBM3-210ENST00000491236 729 ntTSL 224.97■■□□□ 1.595e-17■■■□□ 15.5
U2AF1Q01081 RBM3-206ENST00000485213 947 ntTSL 224.88■■□□□ 1.575e-17■■■□□ 15.5
U2AF1Q01081 RBM3-204ENST00000466764 1375 ntTSL 322.51■■□□□ 1.195e-17■■■□□ 15.5
U2AF1Q01081 RBM3-211ENST00000491240 951 ntTSL 1 (best)21.86■■□□□ 1.095e-17■■■□□ 15.5
U2AF1Q01081 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.035e-17■■■□□ 15.5
U2AF1Q01081 RBM3-205ENST00000472897 501 ntTSL 520.99■□□□□ 0.955e-17■■■□□ 15.5
U2AF1Q01081 RBM3-207ENST00000488216 835 ntTSL 320.79■□□□□ 0.925e-17■■■□□ 15.5
U2AF1Q01081 RBM3-208ENST00000489344 724 ntTSL 218.34■□□□□ 0.535e-17■■■□□ 15.5
U2AF1Q01081 RBM3-203ENST00000376759 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.135e-17■■■□□ 15.5
U2AF1Q01081 RBM3-209ENST00000490127 567 ntTSL 515.06■□□□□ 05e-17■■■□□ 15.5
U2AF1Q01081 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.45e-6■■■□□ 15.5
U2AF1Q01081 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.285e-6■■■□□ 15.5
U2AF1Q01081 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.165e-6■■■□□ 15.5
U2AF1Q01081 SPG11-201ENST00000261866 7774 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.095e-6■■■□□ 15.5
U2AF1Q01081 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.52e-6■■■□□ 15.5
U2AF1Q01081 KBTBD2-207ENST00000485611 537 ntTSL 418.11■□□□□ 0.492e-6■■■□□ 15.5
U2AF1Q01081 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC23.23■■□□□ 1.312e-37■■■□□ 15.5
U2AF1Q01081 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.762e-37■■■□□ 15.5
U2AF1Q01081 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.5■□□□□ 0.712e-37■■■□□ 15.5
U2AF1Q01081 ALAS2-207ENST00000493869 658 ntTSL 218.53■□□□□ 0.562e-37■■■□□ 15.5
U2AF1Q01081 ALAS2-205ENST00000463868 646 ntTSL 318.53■□□□□ 0.562e-37■■■□□ 15.5
U2AF1Q01081 ALAS2-206ENST00000477869 582 ntTSL 515.93■□□□□ 0.142e-37■■■□□ 15.5
U2AF1Q01081 ALAS2-204ENST00000455688 664 ntTSL 28.55□□□□□ -1.042e-37■■■□□ 15.5
U2AF1Q01081 TIAL1-211ENST00000489822 2222 ntTSL 221.35■■□□□ 1.015e-8■■■□□ 15.5
U2AF1Q01081 TIAL1-213ENST00000497671 2321 ntTSL 1 (best)19.01■□□□□ 0.635e-8■■■□□ 15.5
U2AF1Q01081 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.825e-8■■■□□ 15.5
U2AF1Q01081 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC9.22□□□□□ -0.935e-8■■■□□ 15.5
U2AF1Q01081 TIAL1-209ENST00000470781 1727 ntTSL 27.64□□□□□ -1.195e-8■■■□□ 15.5
U2AF1Q01081 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC17.44■□□□□ 0.385e-26■■■□□ 15.4
U2AF1Q01081 CREBZF-207ENST00000528889 745 ntTSL 39.76□□□□□ -0.855e-26■■■□□ 15.4
U2AF1Q01081 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.06■■■□□ 2.41e-6■■■□□ 15.4
U2AF1Q01081 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.481e-6■■■□□ 15.4
U2AF1Q01081 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC22.76■■□□□ 1.231e-6■■■□□ 15.4
U2AF1Q01081 RPRD1A-208ENST00000589050 1022 ntTSL 1 (best)20.67■□□□□ 0.91e-6■■■□□ 15.4
U2AF1Q01081 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.561e-6■■■□□ 15.4
U2AF1Q01081 NNT-202ENST00000344920 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.14e-8■■■□□ 15.4
U2AF1Q01081 HERC1-204ENST00000559715 495 ntTSL 214.84□□□□□ -0.034e-8■■■□□ 15.4
U2AF1Q01081 NNT-208ENST00000512996 4288 ntTSL 5 BASIC12.17□□□□□ -0.464e-8■■■□□ 15.4
U2AF1Q01081 NNT-205ENST00000505678 708 ntTSL 510.55□□□□□ -0.724e-8■■■□□ 15.4
U2AF1Q01081 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.854e-8■■■□□ 15.4
U2AF1Q01081 LRCH3-205ENST00000433298 977 ntTSL 59.73□□□□□ -0.854e-8■■■□□ 15.4
U2AF1Q01081 LRCH3-210ENST00000461674 537 ntTSL 59.18□□□□□ -0.944e-8■■■□□ 15.4
U2AF1Q01081 LRCH3-216ENST00000481048 536 ntTSL 38.56□□□□□ -1.044e-8■■■□□ 15.4
U2AF1Q01081 NNT-207ENST00000512422 754 ntTSL 38.22□□□□□ -1.094e-8■■■□□ 15.4
U2AF1Q01081 NNT-210ENST00000515208 747 ntTSL 37.78□□□□□ -1.164e-8■■■□□ 15.4
U2AF1Q01081 RPRD1A-204ENST00000585953 2357 ntTSL 33.2□□□□□ -1.91e-6■■■□□ 15.4
U2AF1Q01081 RPRD1A-210ENST00000591994 2484 ntTSL 23.07□□□□□ -1.921e-6■■■□□ 15.4
U2AF1Q01081 LRCH3-209ENST00000452660 681 ntTSL 52.74□□□□□ -1.974e-8■■■□□ 15.4
U2AF1Q01081 FUS-212ENST00000569760 639 ntTSL 231.48■■■□□ 2.631e-14■■■□□ 15.4
U2AF1Q01081 FUS-204ENST00000483853 778 ntTSL 228.26■■■□□ 2.111e-14■■■□□ 15.4
U2AF1Q01081 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.033e-9■■■□□ 15.4
U2AF1Q01081 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.323e-9■■■□□ 15.4
U2AF1Q01081 TVP23C-CDRT4-204ENST00000557349 1005 ntTSL 222.38■■□□□ 1.171e-11■■■□□ 15.4
Retrieved 100 of 10,096 protein–RNA pairs in 64.1 ms