RNA–Protein interactions for RNA: ENST00000481048.5

LRCH3-216, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 536 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-216ENST00000481048 AEBP2Q6ZN18 517 aaPredicted RBP28.98■■■□□ 2.23
LRCH3-216ENST00000481048 CHIC1Q5VXU3 224 aa27.55■■■□□ 2
LRCH3-216ENST00000481048 SENP3Q9H4L4 574 aaPredicted RBP24.72■■□□□ 1.55
LRCH3-216ENST00000481048 PHF23Q9BUL5 403 aaPredicted RBP24.42■■□□□ 1.5
LRCH3-216ENST00000481048 FOXD1Q16676 465 aa23.05■■□□□ 1.28
LRCH3-216ENST00000481048 PLPPR3Q6T4P5 718 aa22.04■■□□□ 1.12
LRCH3-216ENST00000481048 PPP6R1Q9UPN7 881 aa21.58■■□□□ 1.05
LRCH3-216ENST00000481048 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
LRCH3-216ENST00000481048 MSH5O43196 834 aa21.54■■□□□ 1.04
LRCH3-216ENST00000481048 ADRA2BP18089 450 aa21.53■■□□□ 1.04
LRCH3-216ENST00000481048 POTEDQ86YR6 584 aa20.98■□□□□ 0.95
LRCH3-216ENST00000481048 MAPK8IP2Q13387 824 aaPredicted RBP19.76■□□□□ 0.75
LRCH3-216ENST00000481048 SCAF1Q9H7N4 1312 aaKnown RBP19.7■□□□□ 0.74
LRCH3-216ENST00000481048 DMRT2Q9Y5R5 561 aa19.6■□□□□ 0.73
LRCH3-216ENST00000481048 PPP4R3CPQ6ZMV5 832 aa19.34■□□□□ 0.69
LRCH3-216ENST00000481048 CNKSR2Q8WXI2 1034 aa18.95■□□□□ 0.62
LRCH3-216ENST00000481048 HOXD11P31277 338 aaPredicted RBP18.89■□□□□ 0.61
LRCH3-216ENST00000481048 DCAF8L1A6NGE4 600 aa18.86■□□□□ 0.61
LRCH3-216ENST00000481048 RNF216Q9NWF9 866 aaPredicted RBP18.76■□□□□ 0.59
LRCH3-216ENST00000481048 NCBP3Q53F19 620 aaKnown RBP18.61■□□□□ 0.57
LRCH3-216ENST00000481048 CACNB1Q02641 598 aaPredicted RBP18.5■□□□□ 0.55
LRCH3-216ENST00000481048 RNF39Q9H2S5 420 aa18.39■□□□□ 0.53
LRCH3-216ENST00000481048 NPM3O75607 178 aaKnown RBP18.32■□□□□ 0.52
LRCH3-216ENST00000481048 DNAJC5BQ9UF47 199 aa18.2■□□□□ 0.5
LRCH3-216ENST00000481048 C1QBPQ07021 282 aaKnown RBP18.12■□□□□ 0.49
LRCH3-216ENST00000481048 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.05■□□□□ 0.48
LRCH3-216ENST00000481048 KCNA4P22459 653 aa18.02■□□□□ 0.48
LRCH3-216ENST00000481048 U3KPZ7 1027 aaPredicted RBP17.64■□□□□ 0.41
LRCH3-216ENST00000481048 SLC4A2P04920 1241 aa17.49■□□□□ 0.39
LRCH3-216ENST00000481048 SPINK5Q9NQ38 1064 aaPredicted RBP17.39■□□□□ 0.37
LRCH3-216ENST00000481048 CAPN15O75808 1086 aa17.38■□□□□ 0.37
LRCH3-216ENST00000481048 DSG3P32926 999 aa17.23■□□□□ 0.35
LRCH3-216ENST00000481048 APLP2Q06481 763 aa17.16■□□□□ 0.34
LRCH3-216ENST00000481048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
LRCH3-216ENST00000481048 HNRNPUL2Q1KMD3 747 aaKnown RBP17.15■□□□□ 0.34
LRCH3-216ENST00000481048 TRHP20396 242 aaPredicted RBP17.11■□□□□ 0.33
LRCH3-216ENST00000481048 SAMD1Q6SPF0 538 aaPredicted RBP17.06■□□□□ 0.32
LRCH3-216ENST00000481048 ZNF219Q9P2Y4 722 aaPredicted RBP17.04■□□□□ 0.32
LRCH3-216ENST00000481048 SLC4A1APQ9BWU0 796 aaKnown RBP17.02■□□□□ 0.32
LRCH3-216ENST00000481048 ABCB7O75027 752 aa16.98■□□□□ 0.31
LRCH3-216ENST00000481048 MYCNP04198 464 aaPredicted RBP16.95■□□□□ 0.3
LRCH3-216ENST00000481048 FOXD4L1Q9NU39 408 aa16.79■□□□□ 0.28
LRCH3-216ENST00000481048 POLA2Q14181 598 aa16.65■□□□□ 0.26
LRCH3-216ENST00000481048 ATF5Q9Y2D1 282 aaPredicted RBP16.56■□□□□ 0.24
LRCH3-216ENST00000481048 ZBTB22O15209 634 aa16.55■□□□□ 0.24
LRCH3-216ENST00000481048 POTEHQ6S545 545 aa16.45■□□□□ 0.22
LRCH3-216ENST00000481048 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
LRCH3-216ENST00000481048 ZBTB12Q9Y330 459 aaPredicted RBP16.29■□□□□ 0.2
LRCH3-216ENST00000481048 ATXN8OSP0DMR3 200 aa16.26■□□□□ 0.19
LRCH3-216ENST00000481048 OSCARQ8IYS5 282 aa16.1■□□□□ 0.17
LRCH3-216ENST00000481048 CHRDL2Q6WN34 429 aa16.09■□□□□ 0.17
LRCH3-216ENST00000481048 AKT1S1Q96B36 256 aa16.07■□□□□ 0.16
LRCH3-216ENST00000481048 NISCHQ9Y2I1 1504 aa16.06■□□□□ 0.16
LRCH3-216ENST00000481048 REM2Q8IYK8 340 aaPredicted RBP15.94■□□□□ 0.14
LRCH3-216ENST00000481048 FBLN2P98095 1184 aa15.93■□□□□ 0.14
LRCH3-216ENST00000481048 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
LRCH3-216ENST00000481048 MKRN4PQ13434 485 aaPredicted RBP15.8■□□□□ 0.12
LRCH3-216ENST00000481048 SPDYE2BA6NHP3 402 aa15.79■□□□□ 0.12
LRCH3-216ENST00000481048 SPDYE6P0CI01 402 aa15.79■□□□□ 0.12
LRCH3-216ENST00000481048 SPDYE2Q495Y8 402 aa15.79■□□□□ 0.12
LRCH3-216ENST00000481048 PITPNM1O00562 1244 aa15.76■□□□□ 0.11
LRCH3-216ENST00000481048 PIP4P2Q8N4L2 257 aa15.7■□□□□ 0.1
LRCH3-216ENST00000481048 EHMT2Q96KQ7 1210 aa15.68■□□□□ 0.1
LRCH3-216ENST00000481048 ZNF692Q9BU19 519 aaPredicted RBP15.64■□□□□ 0.09
LRCH3-216ENST00000481048 FXR2P51116 673 aaKnown RBP eCLIP15.6■□□□□ 0.09
LRCH3-216ENST00000481048 SSUH2Q9Y2M2 353 aa15.56■□□□□ 0.08
LRCH3-216ENST00000481048 CLEC11AQ9Y240 323 aa15.53■□□□□ 0.08
LRCH3-216ENST00000481048 SPDYE1Q8NFV5 336 aaPredicted RBP15.52■□□□□ 0.08
LRCH3-216ENST00000481048 HAX1O00165 279 aa15.44■□□□□ 0.06
LRCH3-216ENST00000481048 SP7Q8TDD2 431 aaPredicted RBP15.43■□□□□ 0.06
LRCH3-216ENST00000481048 PABPN1Q86U42 306 aaKnown RBP eCLIP15.4■□□□□ 0.06
LRCH3-216ENST00000481048 PRKAR2AP13861 404 aaKnown RBP15.37■□□□□ 0.05
LRCH3-216ENST00000481048 PRR29P0C7W0 189 aa15.26■□□□□ 0.03
LRCH3-216ENST00000481048 EVX2Q03828 476 aa15.23■□□□□ 0.03
LRCH3-216ENST00000481048 CHADLQ6NUI6 762 aa15.21■□□□□ 0.03
LRCH3-216ENST00000481048 C19orf67A6NJJ6 358 aa15.1■□□□□ 0.01
LRCH3-216ENST00000481048 SPDYE4A6NLX3 237 aa15.08■□□□□ 0
LRCH3-216ENST00000481048 FARP1Q9Y4F1 1045 aaPredicted RBP14.98□□□□□ -0.01
LRCH3-216ENST00000481048 STAG3Q9UJ98 1225 aa14.97□□□□□ -0.01
LRCH3-216ENST00000481048 GABBR2O75899 941 aa14.89□□□□□ -0.03
LRCH3-216ENST00000481048 CD44P16070 742 aaKnown RBP14.88□□□□□ -0.03
LRCH3-216ENST00000481048 CREBZFQ9NS37 354 aa14.86□□□□□ -0.03
LRCH3-216ENST00000481048 ZRANB1Q9UGI0 708 aa14.69□□□□□ -0.06
LRCH3-216ENST00000481048 PROM2Q8N271 834 aa14.68□□□□□ -0.06
LRCH3-216ENST00000481048 CLCN6P51797 869 aa14.64□□□□□ -0.07
LRCH3-216ENST00000481048 ZNF579Q8NAF0 562 aaKnown RBP14.63□□□□□ -0.07
LRCH3-216ENST00000481048 NPM1P06748 294 aaKnown RBP eCLIP14.61□□□□□ -0.07
LRCH3-216ENST00000481048 MNX1P50219 401 aaPredicted RBP14.6□□□□□ -0.07
LRCH3-216ENST00000481048 PAK3O75914 559 aaPredicted RBP14.57□□□□□ -0.08
LRCH3-216ENST00000481048 POTEIP0CG38 1075 aa14.56□□□□□ -0.08
LRCH3-216ENST00000481048 DCBLD2Q96PD2 775 aa14.52□□□□□ -0.09
LRCH3-216ENST00000481048 LHX8Q68G74 356 aa14.49□□□□□ -0.09
LRCH3-216ENST00000481048 PHF12Q96QT6 1004 aa14.48□□□□□ -0.09
LRCH3-216ENST00000481048 GALR2O43603 387 aaPredicted RBP14.47□□□□□ -0.09
LRCH3-216ENST00000481048 CCDC180Q9P1Z9 1646 aa14.44□□□□□ -0.1
LRCH3-216ENST00000481048 MIER1Q8N108 512 aa14.42□□□□□ -0.1
LRCH3-216ENST00000481048 PLEKHG5O94827 1062 aa14.39□□□□□ -0.11
LRCH3-216ENST00000481048 FKBP8Q14318 412 aa14.37□□□□□ -0.11
LRCH3-216ENST00000481048 TSPYL2Q9H2G4 693 aaPredicted RBP14.37□□□□□ -0.11
LRCH3-216ENST00000481048 ABCC9O60706 1549 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms