Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 HNRNPL-202ENST00000388749 1952 ntTSL 511.05□□□□□ -0.643e-6■■□□□ 13.2
SF3B1O75533 HNRNPL-206ENST00000597731 3094 ntTSL 210.83□□□□□ -0.683e-6■■□□□ 13.2
SF3B1O75533 HNRNPL-207ENST00000598985 900 ntTSL 515.55■□□□□ 0.081e-6■■□□□ 13.1
SF3B1O75533 SLC20A1-204ENST00000433924 638 ntTSL 413.82□□□□□ -0.21e-6■■□□□ 13.1
SF3B1O75533 SLC20A1-209ENST00000498224 692 ntTSL 211.02□□□□□ -0.651e-6■■□□□ 13.1
SF3B1O75533 SEC31A-230ENST00000510167 857 ntTSL 49.77□□□□□ -0.851e-6■■□□□ 13.1
SF3B1O75533 SLC20A1-205ENST00000456264 574 ntTSL 46.2□□□□□ -1.421e-6■■□□□ 13.1
SF3B1O75533 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.07□□□□□ -1.441e-6■■□□□ 13.1
SF3B1O75533 SEC31A-224ENST00000507828 1329 ntTSL 55.16□□□□□ -1.581e-6■■□□□ 13.1
SF3B1O75533 SLC20A1-202ENST00000413135 584 ntTSL 55.12□□□□□ -1.591e-6■■□□□ 13.1
SF3B1O75533 SLC20A1-203ENST00000423633 668 ntTSL 25.03□□□□□ -1.61e-6■■□□□ 13.1
SF3B1O75533 SEC31A-212ENST00000503226 613 ntTSL 34.3□□□□□ -1.721e-6■■□□□ 13.1
SF3B1O75533 SEC31A-235ENST00000512732 551 ntTSL 44.21□□□□□ -1.741e-6■■□□□ 13.1
SF3B1O75533 SEC31A-234ENST00000512664 710 ntTSL 33.4□□□□□ -1.871e-6■■□□□ 13.1
SF3B1O75533 OAZ1-209ENST00000592787 857 ntTSL 217.78■□□□□ 0.444e-7■■□□□ 13.1
SF3B1O75533 PGK1-202ENST00000474281 307 ntTSL 1 (best)3.77□□□□□ -1.812e-7■■□□□ 13.1
SF3B1O75533 NEAT1-202ENST00000501122 22743 ntBASIC4.86□□□□□ -1.632e-6■■□□□ 13.1
SF3B1O75533 RPS18-236ENST00000490191 996 ntTSL 217.72■□□□□ 0.431e-8■■□□□ 13.1
SF3B1O75533 RPS18-230ENST00000439602 613 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.351e-8■■□□□ 13.1
SF3B1O75533 RPS18-233ENST00000474973 589 ntTSL 2 BASIC12.88□□□□□ -0.351e-8■■□□□ 13.1
SF3B1O75533 RPS18-234ENST00000476222 685 ntTSL 1 (best)12.88□□□□□ -0.351e-8■■□□□ 13.1
SF3B1O75533 RPS18-231ENST00000472218 1109 ntTSL 211.42□□□□□ -0.581e-8■■□□□ 13.1
SF3B1O75533 RPS18-232ENST00000474626 639 ntTSL 310.75□□□□□ -0.691e-8■■□□□ 13.1
SF3B1O75533 RPS18-237ENST00000496813 642 ntTSL 210.75□□□□□ -0.691e-8■■□□□ 13.1
SF3B1O75533 DEK-207ENST00000515742 661 ntTSL 225.14■■□□□ 1.628e-6■■□□□ 13
SF3B1O75533 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.11■□□□□ 0.338e-6■■□□□ 13
SF3B1O75533 DEK-204ENST00000505224 1372 ntTSL 214.6□□□□□ -0.078e-6■■□□□ 13
SF3B1O75533 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.158e-6■■□□□ 13
SF3B1O75533 DEK-203ENST00000503715 580 ntTSL 514.07□□□□□ -0.168e-6■■□□□ 13
SF3B1O75533 BCLAF1-208ENST00000528229 573 ntTSL 28.03□□□□□ -1.125e-6■■□□□ 13
SF3B1O75533 HSPA5-201ENST00000324460 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.749e-7■■□□□ 13
SF3B1O75533 PABPN1-205ENST00000555295 406 ntTSL 314.18□□□□□ -0.141e-11■■□□□ 13
SF3B1O75533 TIAL1-208ENST00000470635 336 ntTSL 39.72□□□□□ -0.852e-7■■□□□ 12.9
SF3B1O75533 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.794e-7■■□□□ 12.9
SF3B1O75533 MPP1-217ENST00000493871 585 ntTSL 28.63□□□□□ -1.038e-7■■□□□ 12.8
SF3B1O75533 CROCCP2-201ENST00000362058 2029 ntTSL 225.05■■□□□ 1.63e-6■■□□□ 12.8
SF3B1O75533 CEP152-210ENST00000561245 577 ntTSL 213.58□□□□□ -0.242e-8■■□□□ 12.8
SF3B1O75533 NBAS-204ENST00000427792 442 ntTSL 23.12□□□□□ -1.919e-9■■□□□ 12.7
SF3B1O75533 SMCHD1-206ENST00000581631 729 ntTSL 31.66□□□□□ -2.148e-8■■□□□ 12.7
SF3B1O75533 USP48-207ENST00000471752 445 ntTSL 38.86□□□□□ -0.996e-6■■□□□ 12.7
SF3B1O75533 CTBP1-206ENST00000504784 418 ntTSL 315.45■□□□□ 0.064e-7■■□□□ 12.7
SF3B1O75533 OAZ1-204ENST00000588673 780 ntTSL 322.28■■□□□ 1.166e-7■■□□□ 12.6
SF3B1O75533 SETD5-209ENST00000431285 1824 ntTSL 525.49■■□□□ 1.672e-6■■□□□ 12.6
SF3B1O75533 SETD5-212ENST00000450326 921 ntTSL 317.14■□□□□ 0.332e-6■■□□□ 12.6
SF3B1O75533 SETD5-207ENST00000415650 579 ntTSL 414.97□□□□□ -0.012e-6■■□□□ 12.6
SF3B1O75533 SETD5-211ENST00000443339 3478 ntTSL 211.35□□□□□ -0.592e-6■■□□□ 12.6
SF3B1O75533 HNRNPU-229ENST00000640440 871 ntTSL 315.82■□□□□ 0.122e-6■■□□□ 12.6
SF3B1O75533 SRRT-207ENST00000466432 378 ntTSL 214.45□□□□□ -0.12e-6■■□□□ 12.6
SF3B1O75533 CTNND1-224ENST00000530068 579 ntTSL 412.36□□□□□ -0.432e-6■■□□□ 12.6
SF3B1O75533 TMX2-CTNND1-201ENST00000528395 585 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.452e-6■■□□□ 12.6
SF3B1O75533 AP001931.1-201ENST00000531074 580 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.482e-6■■□□□ 12.6
SF3B1O75533 CTNND1-209ENST00000524579 505 ntTSL 42.68□□□□□ -1.982e-6■■□□□ 12.6
SF3B1O75533 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.913e-7■■□□□ 12.6
SF3B1O75533 OAZ1-210ENST00000593012 1357 ntTSL 219.06■□□□□ 0.643e-7■■□□□ 12.6
SF3B1O75533 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.563e-7■■□□□ 12.6
SF3B1O75533 OAZ1-201ENST00000581150 1131 ntTSL 518.23■□□□□ 0.513e-7■■□□□ 12.6
SF3B1O75533 OAZ1-207ENST00000590943 1012 ntTSL 217.47■□□□□ 0.393e-7■■□□□ 12.6
SF3B1O75533 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.043e-9■■□□□ 12.5
SF3B1O75533 ACTG1-204ENST00000571721 813 ntTSL 520.7■□□□□ 0.93e-9■■□□□ 12.5
SF3B1O75533 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.823e-9■■□□□ 12.5
SF3B1O75533 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.353e-9■■□□□ 12.5
SF3B1O75533 ACTG1-205ENST00000572105 1168 ntTSL 515.18■□□□□ 0.023e-9■■□□□ 12.5
SF3B1O75533 ACTG1-203ENST00000571691 761 ntTSL 314.57□□□□□ -0.083e-9■■□□□ 12.5
SF3B1O75533 ACTG1-215ENST00000576917 1958 ntTSL 514.31□□□□□ -0.123e-9■■□□□ 12.5
SF3B1O75533 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.123e-9■■□□□ 12.5
SF3B1O75533 ACTG1-202ENST00000570382 471 ntTSL 414.26□□□□□ -0.133e-9■■□□□ 12.5
SF3B1O75533 ACTG1-213ENST00000576214 1024 ntTSL 513.91□□□□□ -0.183e-9■■□□□ 12.5
SF3B1O75533 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.263e-9■■□□□ 12.5
SF3B1O75533 ACTG1-214ENST00000576544 1720 ntTSL 513.33□□□□□ -0.283e-9■■□□□ 12.5
SF3B1O75533 ACTG1-212ENST00000576209 1698 ntTSL 1 (best)13□□□□□ -0.333e-9■■□□□ 12.5
SF3B1O75533 HNRNPA3-203ENST00000432457 643 ntTSL 310.54□□□□□ -0.729e-7■■□□□ 12.5
SF3B1O75533 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17■□□□□ 0.318e-6■■□□□ 12.5
SF3B1O75533 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17■□□□□ 0.318e-6■■□□□ 12.5
SF3B1O75533 DNAJC19-202ENST00000469657 1239 ntTSL 216.47■□□□□ 0.238e-6■■□□□ 12.5
SF3B1O75533 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.188e-6■■□□□ 12.5
SF3B1O75533 SRRT-206ENST00000460194 575 ntTSL 214.63□□□□□ -0.078e-6■■□□□ 12.5
SF3B1O75533 CHD2-210ENST00000627200 230 ntTSL 310.37□□□□□ -0.758e-6■■□□□ 12.5
SF3B1O75533 HNRNPD-206ENST00000508119 735 ntTSL 29.73□□□□□ -0.858e-6■■□□□ 12.5
SF3B1O75533 DNAJC19-205ENST00000479269 610 ntTSL 3 BASIC9.56□□□□□ -0.888e-6■■□□□ 12.5
SF3B1O75533 HNRNPD-211ENST00000514671 1089 ntTSL 58.95□□□□□ -0.988e-6■■□□□ 12.5
SF3B1O75533 CHD2-214ENST00000628181 545 ntTSL 54.97□□□□□ -1.618e-6■■□□□ 12.5
SF3B1O75533 HNRNPD-210ENST00000514325 4597 ntTSL 1 (best)4.9□□□□□ -1.638e-6■■□□□ 12.5
SF3B1O75533 RPL12-202ENST00000483598 344 ntTSL 24.76□□□□□ -1.658e-6■■□□□ 12.5
SF3B1O75533 BAG6-250ENST00000451898 993 ntTSL 320.6■□□□□ 0.893e-7■■□□□ 12.5
SF3B1O75533 BAG6-248ENST00000441054 654 ntTSL 319.18■□□□□ 0.663e-7■■□□□ 12.5
SF3B1O75533 BAG6-240ENST00000424480 1056 ntTSL 218.46■□□□□ 0.553e-7■■□□□ 12.5
SF3B1O75533 BAG6-255ENST00000456622 859 ntTSL 513.43□□□□□ -0.263e-7■■□□□ 12.5
SF3B1O75533 BAG6-239ENST00000424176 747 ntTSL 313.21□□□□□ -0.293e-7■■□□□ 12.5
SF3B1O75533 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.193e-6■■□□□ 12.4
SF3B1O75533 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC11.12□□□□□ -0.633e-6■■□□□ 12.4
SF3B1O75533 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC10.77□□□□□ -0.693e-6■■□□□ 12.4
SF3B1O75533 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC10.61□□□□□ -0.713e-6■■□□□ 12.4
SF3B1O75533 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.753e-6■■□□□ 12.4
SF3B1O75533 DDX3X-219ENST00000630255 3289 ntTSL 510.25□□□□□ -0.773e-6■■□□□ 12.4
SF3B1O75533 DDX3X-221ENST00000630858 3181 ntTSL 510.22□□□□□ -0.773e-6■■□□□ 12.4
SF3B1O75533 DDX3X-218ENST00000629785 3457 ntTSL 510.08□□□□□ -0.83e-6■■□□□ 12.4
SF3B1O75533 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)9.92□□□□□ -0.823e-6■■□□□ 12.4
SF3B1O75533 DDX3X-220ENST00000630370 3120 ntTSL 59.85□□□□□ -0.833e-6■■□□□ 12.4
SF3B1O75533 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC9.11□□□□□ -0.953e-6■■□□□ 12.4
SF3B1O75533 SLC6A8-205ENST00000442457 523 ntTSL 313.38□□□□□ -0.271e-9■■□□□ 12.4
Retrieved 100 of 46,956 protein–RNA pairs in 3842.2 ms