Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TAF1D-221ENST00000540232 483 ntTSL 32.24□□□□□ -2.051e-7■■□□□ 13.7
SF3B1O75533 TAF1D-218ENST00000533794 505 ntTSL 22.14□□□□□ -2.071e-7■■□□□ 13.7
SF3B1O75533 ACTB-211ENST00000480301 657 ntTSL 1 (best)22.82■■□□□ 1.243e-7■■□□□ 13.7
SF3B1O75533 ACTB-202ENST00000414620 561 ntTSL 417.11■□□□□ 0.333e-7■■□□□ 13.7
SF3B1O75533 ACTB-206ENST00000443528 569 ntTSL 417.09■□□□□ 0.333e-7■■□□□ 13.7
SF3B1O75533 ACTB-212ENST00000484841 1032 ntTSL 522.23■■□□□ 1.152e-7■■□□□ 13.7
SF3B1O75533 ACTB-210ENST00000477812 820 ntTSL 221.47■■□□□ 1.032e-7■■□□□ 13.7
SF3B1O75533 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.552e-7■■□□□ 13.7
SF3B1O75533 ACTB-205ENST00000432588 568 ntTSL 417.89■□□□□ 0.452e-7■■□□□ 13.7
SF3B1O75533 ACTB-207ENST00000462494 2245 ntTSL 517.35■□□□□ 0.372e-7■■□□□ 13.7
SF3B1O75533 ACTB-204ENST00000425660 1845 ntTSL 1 (best)15.87■□□□□ 0.132e-7■■□□□ 13.7
SF3B1O75533 ACTB-209ENST00000473257 556 ntTSL 312.39□□□□□ -0.432e-7■■□□□ 13.7
SF3B1O75533 OAZ1-205ENST00000589361 679 ntTSL 1 (best)17.39■□□□□ 0.371e-13■■□□□ 13.7
SF3B1O75533 MPP1-210ENST00000462825 587 ntTSL 413.91□□□□□ -0.181e-6■■□□□ 13.6
SF3B1O75533 NDE1-210ENST00000574163 352 ntTSL 310.67□□□□□ -0.77e-9■■□□□ 13.5
SF3B1O75533 NDE1-212ENST00000577101 575 ntTSL 410.57□□□□□ -0.727e-9■■□□□ 13.5
SF3B1O75533 PTCD3-216ENST00000487043 1054 ntTSL 33.5□□□□□ -1.857e-9■■□□□ 13.5
SF3B1O75533 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.742e-6■■□□□ 13.5
SF3B1O75533 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.51■□□□□ 0.872e-7■■□□□ 13.5
SF3B1O75533 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.282e-7■■□□□ 13.5
SF3B1O75533 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.65■□□□□ 0.262e-7■■□□□ 13.5
SF3B1O75533 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.06■□□□□ 0.162e-7■■□□□ 13.5
SF3B1O75533 MGEA5-208ENST00000479811 695 ntTSL 512.04□□□□□ -0.482e-7■■□□□ 13.5
SF3B1O75533 MGEA5-209ENST00000482611 1664 ntTSL 1 (best)6.44□□□□□ -1.382e-7■■□□□ 13.5
SF3B1O75533 RBM39-212ENST00000429968 2149 ntTSL 214.33□□□□□ -0.129e-7■■□□□ 13.4
SF3B1O75533 RBM39-216ENST00000444878 2124 ntTSL 214.13□□□□□ -0.159e-7■■□□□ 13.4
SF3B1O75533 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC13.24□□□□□ -0.299e-7■■□□□ 13.4
SF3B1O75533 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.399e-7■■□□□ 13.4
SF3B1O75533 RBM39-245ENST00000639702 5914 ntTSL 512.47□□□□□ -0.419e-7■■□□□ 13.4
SF3B1O75533 RBM39-223ENST00000463004 4580 ntTSL 512.24□□□□□ -0.459e-7■■□□□ 13.4
SF3B1O75533 RBM39-206ENST00000403542 2883 ntTSL 212.23□□□□□ -0.459e-7■■□□□ 13.4
SF3B1O75533 RBM39-202ENST00000338163 2792 ntTSL 212.21□□□□□ -0.459e-7■■□□□ 13.4
SF3B1O75533 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.114e-6■■□□□ 13.4
SF3B1O75533 SLTM-203ENST00000432750 2383 ntTSL 512.52□□□□□ -0.44e-6■■□□□ 13.4
SF3B1O75533 SLTM-212ENST00000557924 3021 ntTSL 211.88□□□□□ -0.514e-6■■□□□ 13.4
SF3B1O75533 SLTM-202ENST00000380516 4147 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.794e-6■■□□□ 13.4
SF3B1O75533 CKAP2-201ENST00000258607 3375 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.944e-6■■□□□ 13.4
SF3B1O75533 SLTM-208ENST00000492526 3022 ntTSL 28.47□□□□□ -1.054e-6■■□□□ 13.4
SF3B1O75533 CKAP2-203ENST00000378037 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.094e-6■■□□□ 13.4
SF3B1O75533 SLTM-211ENST00000557791 334 ntTSL 36.03□□□□□ -1.444e-6■■□□□ 13.4
SF3B1O75533 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.464e-6■■□□□ 13.4
SF3B1O75533 U2SURP-204ENST00000465175 571 ntTSL 43.82□□□□□ -1.84e-6■■□□□ 13.4
SF3B1O75533 U2SURP-210ENST00000485374 470 ntTSL 43.52□□□□□ -1.854e-6■■□□□ 13.4
SF3B1O75533 U2SURP-213ENST00000491827 824 ntTSL 32.95□□□□□ -1.944e-6■■□□□ 13.4
SF3B1O75533 SLTM-216ENST00000558734 589 ntTSL 52.39□□□□□ -2.034e-6■■□□□ 13.4
SF3B1O75533 TAF1D-207ENST00000527169 1127 ntTSL 518.98■□□□□ 0.631e-7■■□□□ 13.4
SF3B1O75533 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)18.78■□□□□ 0.61e-7■■□□□ 13.4
SF3B1O75533 TAF1D-201ENST00000323981 2540 ntTSL 214.19□□□□□ -0.141e-7■■□□□ 13.4
SF3B1O75533 TAF1D-202ENST00000393259 547 ntTSL 33.33□□□□□ -1.881e-7■■□□□ 13.4
SF3B1O75533 TAF1D-212ENST00000529794 1123 ntTSL 23.18□□□□□ -1.91e-7■■□□□ 13.4
SF3B1O75533 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.27■■□□□ 1.326e-6■■□□□ 13.4
SF3B1O75533 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.146e-6■■□□□ 13.4
SF3B1O75533 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.33■■□□□ 1.016e-6■■□□□ 13.4
SF3B1O75533 RPS15-211ENST00000592700 1602 ntTSL 220.87■□□□□ 0.936e-6■■□□□ 13.4
SF3B1O75533 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.31■□□□□ 0.526e-6■■□□□ 13.4
SF3B1O75533 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.72■□□□□ 0.436e-6■■□□□ 13.4
SF3B1O75533 HNRNPL-213ENST00000601664 447 ntTSL 1 (best)16.73■□□□□ 0.276e-6■■□□□ 13.4
SF3B1O75533 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.43■□□□□ 0.226e-6■■□□□ 13.4
SF3B1O75533 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.43■□□□□ 0.226e-6■■□□□ 13.4
SF3B1O75533 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.43■□□□□ 0.226e-6■■□□□ 13.4
SF3B1O75533 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.226e-6■■□□□ 13.4
SF3B1O75533 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.09■□□□□ 0.176e-6■■□□□ 13.4
SF3B1O75533 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.031e-6■■□□□ 13.4
SF3B1O75533 HDAC7-222ENST00000477937 410 ntTSL 515.14■□□□□ 0.016e-6■■□□□ 13.4
SF3B1O75533 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC13.99□□□□□ -0.176e-6■■□□□ 13.4
SF3B1O75533 CCT8-201ENST00000286788 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.266e-6■■□□□ 13.4
SF3B1O75533 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.276e-6■■□□□ 13.4
SF3B1O75533 HSPA9-210ENST00000508003 582 ntTSL 212.32□□□□□ -0.446e-6■■□□□ 13.4
SF3B1O75533 HNRNPL-204ENST00000595443 2122 ntTSL 211.8□□□□□ -0.526e-6■■□□□ 13.4
SF3B1O75533 CCT8-204ENST00000470450 1872 ntTSL 1 (best)10.53□□□□□ -0.726e-6■■□□□ 13.4
SF3B1O75533 SEPT9-225ENST00000589250 527 ntTSL 210.36□□□□□ -0.756e-6■■□□□ 13.4
SF3B1O75533 CCDC82-207ENST00000538597 849 ntAPPRIS ALT2 TSL 310□□□□□ -0.816e-6■■□□□ 13.4
SF3B1O75533 PRELID2-208ENST00000515161 419 ntTSL 39.8□□□□□ -0.846e-6■■□□□ 13.4
SF3B1O75533 CCT8-212ENST00000626972 1862 ntTSL 2 BASIC9.53□□□□□ -0.886e-6■■□□□ 13.4
SF3B1O75533 AC008982.1-202ENST00000602021 342 ntTSL 58.78□□□□□ -16e-6■■□□□ 13.4
SF3B1O75533 CCDC82-203ENST00000524836 492 ntTSL 36.83□□□□□ -1.326e-6■■□□□ 13.4
SF3B1O75533 RSRC2-203ENST00000392442 928 ntTSL 36.11□□□□□ -1.431e-6■■□□□ 13.4
SF3B1O75533 SCARNA10-201ENST00000459255 330 ntBASIC4.94□□□□□ -1.623e-7■■□□□ 13.4
SF3B1O75533 CCT8-202ENST00000431234 968 ntTSL 54.42□□□□□ -1.76e-6■■□□□ 13.4
SF3B1O75533 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.866e-6■■□□□ 13.4
SF3B1O75533 CCDC82-206ENST00000530203 236 ntAPPRIS ALT2 TSL 52.61□□□□□ -1.996e-6■■□□□ 13.4
SF3B1O75533 SNORD101-201ENST00000384027 73 ntBASIC-0.35□□□□□ -2.466e-8■■□□□ 13.4
SF3B1O75533 LENG8-203ENST00000421200 594 ntTSL 316.05■□□□□ 0.162e-6■■□□□ 13.3
SF3B1O75533 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.25■□□□□ 0.034e-7■■□□□ 13.3
SF3B1O75533 HNRNPH1-218ENST00000510678 1996 ntTSL 514.8□□□□□ -0.044e-7■■□□□ 13.3
SF3B1O75533 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC13.54□□□□□ -0.244e-7■■□□□ 13.3
SF3B1O75533 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.624e-8■■□□□ 13.3
SF3B1O75533 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.184e-8■■□□□ 13.3
SF3B1O75533 HMGB1-206ENST00000405805 4199 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.54e-8■■□□□ 13.3
SF3B1O75533 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.964e-8■■□□□ 13.3
SF3B1O75533 RPRD1B-208ENST00000618318 567 ntTSL 48.27□□□□□ -1.094e-8■■□□□ 13.3
SF3B1O75533 EIF2AK1-208ENST00000474029 609 ntTSL 38.1□□□□□ -1.114e-8■■□□□ 13.3
SF3B1O75533 EIF2AK1-210ENST00000495565 629 ntTSL 37.33□□□□□ -1.244e-8■■□□□ 13.3
SF3B1O75533 EIF2AK1-207ENST00000470168 595 ntTSL 1 (best)5.77□□□□□ -1.494e-8■■□□□ 13.3
SF3B1O75533 RPRD1B-207ENST00000614670 659 ntTSL 35.65□□□□□ -1.514e-8■■□□□ 13.3
SF3B1O75533 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.91□□□□□ -1.784e-8■■□□□ 13.3
SF3B1O75533 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.523e-6■■□□□ 13.2
SF3B1O75533 HNRNPL-212ENST00000601449 1918 ntTSL 517.74■□□□□ 0.433e-6■■□□□ 13.2
SF3B1O75533 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC14.28□□□□□ -0.123e-6■■□□□ 13.2
SF3B1O75533 HNRNPL-203ENST00000595164 2404 ntTSL 213.63□□□□□ -0.233e-6■■□□□ 13.2
Retrieved 100 of 46,956 protein–RNA pairs in 3289.8 ms