Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.711e-6■■■□□ 18.1
SMNDC1O75940 HMGN2-202ENST00000460563 1045 ntTSL 511.55□□□□□ -0.566e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-206ENST00000467700 932 ntTSL 210.64□□□□□ -0.716e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-204ENST00000464888 565 ntTSL 29.47□□□□□ -0.896e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-201ENST00000361427 1191 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.116e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-208ENST00000479815 1030 ntTSL 57.68□□□□□ -1.186e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-203ENST00000463817 853 ntTSL 27.68□□□□□ -1.186e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.216e-11■■■□□ 18.1
SMNDC1O75940 HMGN2-207ENST00000468388 320 ntTSL 36.66□□□□□ -1.346e-11■■■□□ 18.1
SMNDC1O75940 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.415e-6■■■□□ 18.1
SMNDC1O75940 CDK10-204ENST00000472018 2532 ntTSL 216.76■□□□□ 0.275e-6■■■□□ 18.1
SMNDC1O75940 CDK10-209ENST00000505733 1703 ntTSL 216.59■□□□□ 0.255e-6■■■□□ 18.1
SMNDC1O75940 CDK10-212ENST00000510811 1376 ntTSL 216.43■□□□□ 0.225e-6■■■□□ 18.1
SMNDC1O75940 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.16■□□□□ 0.185e-6■■■□□ 18.1
SMNDC1O75940 CDK10-216ENST00000561477 535 ntTSL 313.87□□□□□ -0.195e-6■■■□□ 18.1
SMNDC1O75940 CDK10-201ENST00000331006 3344 ntTSL 2 BASIC12.28□□□□□ -0.445e-6■■■□□ 18.1
SMNDC1O75940 CDK10-217ENST00000564192 897 ntTSL 511.29□□□□□ -0.65e-6■■■□□ 18.1
SMNDC1O75940 CDK10-221ENST00000617879 819 ntTSL 1 (best) BASIC8.8□□□□□ -15e-6■■■□□ 18.1
SMNDC1O75940 GPCPD1-206ENST00000481690 819 ntTSL 320.05■□□□□ 0.82e-7■■■□□ 18.1
SMNDC1O75940 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.142e-7■■■□□ 18.1
SMNDC1O75940 DAZAP1-209ENST00000590419 508 ntTSL 313.07□□□□□ -0.325e-7■■■□□ 18.1
SMNDC1O75940 SREBF1-220ENST00000581707 695 ntTSL 217.51■□□□□ 0.394e-6■■■□□ 18.1
SMNDC1O75940 ANKRD11-206ENST00000562275 2762 ntTSL 514.41□□□□□ -0.13e-6■■■□□ 18
SMNDC1O75940 ANKRD11-202ENST00000330736 8342 ntTSL 513.82□□□□□ -0.23e-6■■■□□ 18
SMNDC1O75940 ANKRD11-209ENST00000564553 471 ntTSL 312.24□□□□□ -0.453e-6■■■□□ 18
SMNDC1O75940 ANKRD11-207ENST00000562816 573 ntTSL 410.28□□□□□ -0.763e-6■■■□□ 18
SMNDC1O75940 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-6■■■□□ 18
SMNDC1O75940 NKTR-215ENST00000487466 2335 ntTSL 215.74■□□□□ 0.113e-28■■■□□ 18
SMNDC1O75940 NKTR-214ENST00000478488 698 ntTSL 315.37■□□□□ 0.053e-28■■■□□ 18
SMNDC1O75940 NKTR-201ENST00000232978 7343 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.533e-28■■■□□ 18
SMNDC1O75940 NKTR-210ENST00000466553 716 ntTSL 28.13□□□□□ -1.113e-28■■■□□ 18
SMNDC1O75940 NKTR-211ENST00000468735 7964 ntTSL 27.15□□□□□ -1.263e-28■■■□□ 18
SMNDC1O75940 NKTR-202ENST00000429888 7325 ntTSL 53.94□□□□□ -1.783e-28■■■□□ 18
SMNDC1O75940 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.89□□□□□ -1.793e-28■■■□□ 18
SMNDC1O75940 NKTR-209ENST00000465584 3839 ntTSL 22.36□□□□□ -2.033e-28■■■□□ 18
SMNDC1O75940 PLEC-206ENST00000357649 14689 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.621e-6■■■□□ 18
SMNDC1O75940 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.357e-18■■■□□ 18
SMNDC1O75940 AUP1-204ENST00000463900 1645 ntTSL 1 (best)15.59■□□□□ 0.097e-18■■■□□ 18
SMNDC1O75940 AUP1-202ENST00000425118 1581 ntTSL 1 (best)15.24■□□□□ 0.037e-18■■■□□ 18
SMNDC1O75940 AUP1-206ENST00000466894 1658 ntTSL 514.61□□□□□ -0.077e-18■■■□□ 18
SMNDC1O75940 AUP1-205ENST00000464887 845 ntTSL 212.56□□□□□ -0.47e-18■■■□□ 18
SMNDC1O75940 AUP1-208ENST00000486234 984 ntTSL 511.62□□□□□ -0.557e-18■■■□□ 18
SMNDC1O75940 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.78■□□□□ 0.63e-6■■■□□ 18
SMNDC1O75940 EEF1B2-207ENST00000445505 515 ntTSL 515.92■□□□□ 0.143e-81■■■□□ 18
SMNDC1O75940 SNORD51-201ENST00000384320 80 ntBASIC5.34□□□□□ -1.553e-81■■■□□ 18
SMNDC1O75940 snoZ196.1-201ENST00000625269 89 ntBASIC3.59□□□□□ -1.833e-81■■■□□ 18
SMNDC1O75940 SREBF1-216ENST00000490796 698 ntTSL 217.86■□□□□ 0.455e-6■■■□□ 18
SMNDC1O75940 C12orf57-203ENST00000538392 979 ntTSL 216.97■□□□□ 0.313e-20■■■□□ 18
SMNDC1O75940 ARFRP1-206ENST00000610774 5178 ntTSL 215.36■□□□□ 0.058e-7■■■□□ 18
SMNDC1O75940 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.37□□□□□ -0.273e-20■■■□□ 18
SMNDC1O75940 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC9.98□□□□□ -0.813e-20■■■□□ 18
SMNDC1O75940 C12orf57-207ENST00000545581 556 ntTSL 38.4□□□□□ -1.063e-20■■■□□ 18
SMNDC1O75940 C12orf57-205ENST00000542222 640 ntTSL 28.25□□□□□ -1.093e-20■■■□□ 18
SMNDC1O75940 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.99■□□□□ 0.631e-8■■■□□ 17.9
SMNDC1O75940 NCLN-204ENST00000588428 1080 ntTSL 518.78■□□□□ 0.61e-8■■■□□ 17.9
SMNDC1O75940 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.161e-8■■■□□ 17.9
SMNDC1O75940 NCLN-203ENST00000587740 1210 ntTSL 1 (best)14□□□□□ -0.171e-8■■■□□ 17.9
SMNDC1O75940 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC7.67□□□□□ -1.184e-28■■■□□ 17.9
SMNDC1O75940 FANCA-221ENST00000566889 2201 ntTSL 1 (best)27.37■■□□□ 1.971e-17■■■□□ 17.9
SMNDC1O75940 KDM4B-205ENST00000588337 504 ntTSL 524.17■■□□□ 1.463e-6■■■□□ 17.9
SMNDC1O75940 CC2D1A-203ENST00000586955 2743 ntTSL 1 (best)17.52■□□□□ 0.392e-13■■■□□ 17.9
SMNDC1O75940 PPP2R5C-207ENST00000553730 1227 ntTSL 217.25■□□□□ 0.352e-13■■■□□ 17.9
SMNDC1O75940 CC2D1A-206ENST00000589138 2435 ntTSL 516.12■□□□□ 0.172e-13■■■□□ 17.9
SMNDC1O75940 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.132e-9■■■□□ 17.9
SMNDC1O75940 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.99□□□□□ -0.011e-17■■■□□ 17.9
SMNDC1O75940 CC2D1A-205ENST00000588932 806 ntTSL 314.84□□□□□ -0.032e-13■■■□□ 17.9
SMNDC1O75940 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.162e-13■■■□□ 17.9
SMNDC1O75940 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC13.69□□□□□ -0.222e-9■■■□□ 17.9
SMNDC1O75940 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.252e-13■■■□□ 17.9
SMNDC1O75940 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.41□□□□□ -0.261e-17■■■□□ 17.9
SMNDC1O75940 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.272e-9■■■□□ 17.9
SMNDC1O75940 LAS1L-205ENST00000484069 5205 ntTSL 213.19□□□□□ -0.32e-9■■■□□ 17.9
SMNDC1O75940 FANCA-220ENST00000566409 395 ntTSL 1 (best)13.14□□□□□ -0.311e-17■■■□□ 17.9
SMNDC1O75940 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC12.42□□□□□ -0.421e-17■■■□□ 17.9
SMNDC1O75940 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC11.78□□□□□ -0.521e-17■■■□□ 17.9
SMNDC1O75940 LAS1L-203ENST00000374811 2439 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.532e-9■■■□□ 17.9
SMNDC1O75940 FANCA-218ENST00000565582 812 ntTSL 310.78□□□□□ -0.681e-17■■■□□ 17.9
SMNDC1O75940 TTC37-214ENST00000515176 508 ntTSL 510.51□□□□□ -0.732e-9■■■□□ 17.9
SMNDC1O75940 PPP2R5C-209ENST00000553890 492 ntTSL 310.31□□□□□ -0.762e-13■■■□□ 17.9
SMNDC1O75940 PPP2R5C-224ENST00000556946 735 ntTSL 2 BASIC10.31□□□□□ -0.762e-13■■■□□ 17.9
SMNDC1O75940 CC2D1A-209ENST00000589679 610 ntTSL 39.89□□□□□ -0.832e-13■■■□□ 17.9
SMNDC1O75940 FUS-211ENST00000568901 521 ntTSL 29.58□□□□□ -0.884e-31■■■□□ 17.9
SMNDC1O75940 PPP2R5C-212ENST00000554442 800 ntTSL 1 (best) BASIC9.18□□□□□ -0.942e-13■■■□□ 17.9
SMNDC1O75940 PPP2R5C-230ENST00000557714 536 ntTSL 4 BASIC9.1□□□□□ -0.952e-13■■■□□ 17.9
SMNDC1O75940 FANCA-225ENST00000567621 618 ntTSL 38.85□□□□□ -0.991e-17■■■□□ 17.9
SMNDC1O75940 TTC37-210ENST00000512026 785 ntTSL 28.25□□□□□ -1.092e-9■■■□□ 17.9
SMNDC1O75940 CASC3-209ENST00000583902 557 ntTSL 28.13□□□□□ -1.112e-9■■■□□ 17.9
SMNDC1O75940 PPP2R5C-208ENST00000553842 421 ntTSL 37.67□□□□□ -1.182e-13■■■□□ 17.9
SMNDC1O75940 TTC37-208ENST00000508181 872 ntTSL 37.14□□□□□ -1.272e-9■■■□□ 17.9
SMNDC1O75940 PPP2R5C-220ENST00000556373 285 ntTSL 56.87□□□□□ -1.312e-13■■■□□ 17.9
SMNDC1O75940 TTC37-207ENST00000507805 1321 ntTSL 56.34□□□□□ -1.392e-9■■■□□ 17.9
SMNDC1O75940 CASC3-202ENST00000394114 2792 ntTSL 26.02□□□□□ -1.452e-9■■■□□ 17.9
SMNDC1O75940 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.482e-9■■■□□ 17.9
SMNDC1O75940 PPP2R5C-221ENST00000556493 457 ntTSL 45.09□□□□□ -1.592e-13■■■□□ 17.9
SMNDC1O75940 PPP2R5C-219ENST00000556307 601 ntTSL 34.32□□□□□ -1.722e-13■■■□□ 17.9
SMNDC1O75940 KDM4B-208ENST00000589104 3470 ntTSL 214.26□□□□□ -0.132e-6■■■□□ 17.9
SMNDC1O75940 EEF2-201ENST00000309311 3164 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.523e-12■■■□□ 17.9
SMNDC1O75940 NOL4L-209ENST00000485364 885 ntTSL 1 (best)21.61■■□□□ 1.056e-6■■■□□ 17.9
SMNDC1O75940 FADS1-215ENST00000541683 1844 ntTSL 216.6■□□□□ 0.258e-9■■■□□ 17.9
SMNDC1O75940 FADS1-217ENST00000544309 581 ntTSL 316.53■□□□□ 0.248e-9■■■□□ 17.9
Retrieved 100 of 11,362 protein–RNA pairs in 289.5 ms