RNA–Protein interactions for RNA: ENST00000246117.8

NCLN-201, Transcript of nicalin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NCLN, Length 4,005 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCLN-201ENST00000246117 NISCHQ9Y2I1 1504 aa25.04■■□□□ 1.6
NCLN-201ENST00000246117 DCAF8L2P0C7V8 631 aa24.29■■□□□ 1.48
NCLN-201ENST00000246117 SHROOM4Q9ULL8 1493 aa23.85■■□□□ 1.41
NCLN-201ENST00000246117 SUPT5HO00267 1087 aaKnown RBP23.84■■□□□ 1.41
NCLN-201ENST00000246117 EHMT2Q96KQ7 1210 aa22.95■■□□□ 1.26
NCLN-201ENST00000246117 PCGF6Q9BYE7 350 aa22.5■■□□□ 1.19
NCLN-201ENST00000246117 FAM9AQ8IZU1 332 aaPredicted RBP22.41■■□□□ 1.18
NCLN-201ENST00000246117 TTBK1Q5TCY1 1321 aaPredicted RBP22.11■■□□□ 1.13
NCLN-201ENST00000246117 LOC105371045A0A1W2PR82 267 aa21.99■■□□□ 1.11
NCLN-201ENST00000246117 CHIC1Q5VXU3 224 aa21.91■■□□□ 1.1
NCLN-201ENST00000246117 PPARGC1BQ86YN6 1023 aaKnown RBP21.88■■□□□ 1.09
NCLN-201ENST00000246117 TRIM41Q8WV44 630 aa21.77■■□□□ 1.08
NCLN-201ENST00000246117 RANGAP1P46060 587 aaPredicted RBP21.61■■□□□ 1.05
NCLN-201ENST00000246117 HRCP23327 699 aa21.61■■□□□ 1.05
NCLN-201ENST00000246117 CCER1Q8TC90 406 aaPredicted RBP21.33■■□□□ 1
NCLN-201ENST00000246117 TRIM26Q12899 539 aaPredicted RBP21.29■■□□□ 1
NCLN-201ENST00000246117 UBTFP17480 764 aaKnown RBP21.21■□□□□ 0.99
NCLN-201ENST00000246117 APLP2Q06481 763 aa21.11■□□□□ 0.97
NCLN-201ENST00000246117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.05■□□□□ 0.96
NCLN-201ENST00000246117 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
NCLN-201ENST00000246117 YTHDC1Q96MU7 727 aaKnown RBP21.03■□□□□ 0.96
NCLN-201ENST00000246117 ZEB1P37275 1124 aaPredicted RBP21■□□□□ 0.95
NCLN-201ENST00000246117 ABCC9O60706 1549 aa20.94■□□□□ 0.94
NCLN-201ENST00000246117 ZCCHC6Q5VYS8 1495 aaKnown RBP20.89■□□□□ 0.93
NCLN-201ENST00000246117 HNRNPUL2Q1KMD3 747 aaKnown RBP20.84■□□□□ 0.93
NCLN-201ENST00000246117 ATP1B4Q9UN42 357 aaPredicted RBP20.82■□□□□ 0.92
NCLN-201ENST00000246117 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.928e-6■□□□□ 8.9
NCLN-201ENST00000246117 ITGAEP38570 1179 aa20.71■□□□□ 0.91
NCLN-201ENST00000246117 CENPBP07199 599 aaPredicted RBP20.68■□□□□ 0.9
NCLN-201ENST00000246117 SCRIBQ14160 1630 aa20.53■□□□□ 0.88
NCLN-201ENST00000246117 DIEXFQ68CQ4 756 aaKnown RBP20.49■□□□□ 0.87
NCLN-201ENST00000246117 DCAF1Q9Y4B6 1507 aa20.31■□□□□ 0.84
NCLN-201ENST00000246117 GTF3C3Q9Y5Q9 886 aa20.29■□□□□ 0.84
NCLN-201ENST00000246117 RSF1Q96T23 1441 aaPredicted RBP20.25■□□□□ 0.83
NCLN-201ENST00000246117 CCDC180Q9P1Z9 1646 aa20.22■□□□□ 0.83
NCLN-201ENST00000246117 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
NCLN-201ENST00000246117 CNGB1Q14028 1251 aaPredicted RBP20.18■□□□□ 0.82
NCLN-201ENST00000246117 PELP1Q8IZL8 1130 aaKnown RBP20.18■□□□□ 0.82
NCLN-201ENST00000246117 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
NCLN-201ENST00000246117 NEUROD1Q13562 356 aa20.07■□□□□ 0.8
NCLN-201ENST00000246117 CECR2Q9BXF3 1484 aa20.05■□□□□ 0.8
NCLN-201ENST00000246117 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
NCLN-201ENST00000246117 ACIN1Q9UKV3 1341 aaKnown RBP20.04■□□□□ 0.8
NCLN-201ENST00000246117 FAM50AQ14320 339 aaKnown RBP20.03■□□□□ 0.8
NCLN-201ENST00000246117 ZNF316A6NFI3 1004 aaPredicted RBP20.01■□□□□ 0.79
NCLN-201ENST00000246117 BCANQ96GW7 911 aa19.96■□□□□ 0.79
NCLN-201ENST00000246117 POLR3GLQ9BT43 218 aa19.93■□□□□ 0.78
NCLN-201ENST00000246117 RB1CC1Q8TDY2 1594 aa19.87■□□□□ 0.77
NCLN-201ENST00000246117 ARID3CA6NKF2 412 aa19.87■□□□□ 0.77
NCLN-201ENST00000246117 NEFLP07196 543 aa19.85■□□□□ 0.77
NCLN-201ENST00000246117 MIER1Q8N108 512 aa19.81■□□□□ 0.76
NCLN-201ENST00000246117 HIRIP3Q9BW71 556 aaPredicted RBP19.73■□□□□ 0.75
NCLN-201ENST00000246117 CEP162Q5TB80 1403 aa19.73■□□□□ 0.75
NCLN-201ENST00000246117 SOGA1O94964 1423 aa19.72■□□□□ 0.75
NCLN-201ENST00000246117 MROH2BQ7Z745 1585 aa19.71■□□□□ 0.75
NCLN-201ENST00000246117 ERICH6Q7L0X2 663 aa19.66■□□□□ 0.74
NCLN-201ENST00000246117 TRIM52Q96A61 297 aa19.64■□□□□ 0.73
NCLN-201ENST00000246117 ABCC8Q09428 1581 aa19.62■□□□□ 0.73
NCLN-201ENST00000246117 CLIP1P30622 1438 aa19.59■□□□□ 0.73
NCLN-201ENST00000246117 DDX10Q13206 875 aaKnown RBP19.59■□□□□ 0.73
NCLN-201ENST00000246117 CCDC88BA6NC98 1476 aa19.57■□□□□ 0.72
NCLN-201ENST00000246117 ZNF326Q5BKZ1 582 aaKnown RBP19.54■□□□□ 0.72
NCLN-201ENST00000246117 WRNQ14191 1432 aaPredicted RBP eCLIP19.49■□□□□ 0.71
NCLN-201ENST00000246117 WIZO95785 1651 aa19.48■□□□□ 0.71
NCLN-201ENST00000246117 CHIC2Q9UKJ5 165 aa19.43■□□□□ 0.7
NCLN-201ENST00000246117 TNIKQ9UKE5 1360 aa19.43■□□□□ 0.7
NCLN-201ENST00000246117 FBLN2P98095 1184 aa19.43■□□□□ 0.7
NCLN-201ENST00000246117 RUSC2Q8N2Y8 1516 aa19.41■□□□□ 0.7
NCLN-201ENST00000246117 ANP32CO43423 234 aa19.41■□□□□ 0.7
NCLN-201ENST00000246117 SENP3-EIF4A1A0A087X0R7 540 aa19.39■□□□□ 0.69
NCLN-201ENST00000246117 NACADO15069 1562 aa19.39■□□□□ 0.69
NCLN-201ENST00000246117 GOLGA3Q08378 1498 aa19.39■□□□□ 0.69
NCLN-201ENST00000246117 FKBP8Q14318 412 aa19.38■□□□□ 0.69
NCLN-201ENST00000246117 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
NCLN-201ENST00000246117 SIN3AQ96ST3 1273 aa19.35■□□□□ 0.69
NCLN-201ENST00000246117 BAZ1AQ9NRL2 1556 aaPredicted RBP19.32■□□□□ 0.68
NCLN-201ENST00000246117 IRX6P78412 446 aaPredicted RBP19.31■□□□□ 0.68
NCLN-201ENST00000246117 MYT1LQ9UL68 1186 aa19.31■□□□□ 0.68
NCLN-201ENST00000246117 ZNF777Q9ULD5 760 aaPredicted RBP19.29■□□□□ 0.68
NCLN-201ENST00000246117 BAZ1BQ9UIG0 1483 aaKnown RBP19.22■□□□□ 0.67
NCLN-201ENST00000246117 HNRNPUQ00839 825 aaKnown RBP eCLIP19.22■□□□□ 0.67
NCLN-201ENST00000246117 RRP7BPQ9NSQ0 103 aa19.21■□□□□ 0.67
NCLN-201ENST00000246117 EEA1Q15075 1411 aa19.19■□□□□ 0.66
NCLN-201ENST00000246117 CEP164Q9UPV0 1460 aa19.19■□□□□ 0.66
NCLN-201ENST00000246117 FAM9BQ8IZU0 186 aa19.18■□□□□ 0.66
NCLN-201ENST00000246117 TONSLQ96HA7 1378 aa19.18■□□□□ 0.66
NCLN-201ENST00000246117 MYT1Q01538 1121 aa19.16■□□□□ 0.66
NCLN-201ENST00000246117 SALL2Q9Y467 1007 aaPredicted RBP19.14■□□□□ 0.65
NCLN-201ENST00000246117 KCNH8Q96L42 1107 aa19.12■□□□□ 0.65
NCLN-201ENST00000246117 MTUS2Q5JR59 1369 aa19.06■□□□□ 0.64
NCLN-201ENST00000246117 SLC4A1APQ9BWU0 796 aaKnown RBP19.06■□□□□ 0.64
NCLN-201ENST00000246117 RAPGEF2Q9Y4G8 1499 aa19.06■□□□□ 0.64
NCLN-201ENST00000246117 VPS8Q8N3P4 1428 aa19.05■□□□□ 0.64
NCLN-201ENST00000246117 KIF27Q86VH2 1401 aa19.02■□□□□ 0.64
NCLN-201ENST00000246117 CDK11AQ9UQ88 783 aaPredicted RBP19■□□□□ 0.63
NCLN-201ENST00000246117 SUPT16HQ9Y5B9 1047 aaKnown RBP19■□□□□ 0.63
NCLN-201ENST00000246117 CCNB3Q8WWL7 1395 aa18.99■□□□□ 0.63
NCLN-201ENST00000246117 KDM2AQ9Y2K7 1162 aa18.98■□□□□ 0.63
NCLN-201ENST00000246117 TOP2AP11388 1531 aaKnown RBP18.97■□□□□ 0.63
NCLN-201ENST00000246117 FOXD1Q16676 465 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms