Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.219e-7■■■■■ 27.3
SF3B1O75533 NUSAP1-201ENST00000260359 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.729e-7■■■■■ 27.3
SF3B1O75533 NUSAP1-203ENST00000450592 1301 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.949e-7■■■■■ 27.3
SF3B1O75533 NUSAP1-212ENST00000560747 2256 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.959e-7■■■■■ 27.3
SF3B1O75533 NUSAP1-205ENST00000558123 1934 ntTSL 58.84□□□□□ -0.999e-7■■■■■ 27.3
SF3B1O75533 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.089e-7■■■■■ 27.3
SF3B1O75533 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.229e-7■■■■■ 27.3
SF3B1O75533 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.783e-7■■■■■ 27.3
SF3B1O75533 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.39■□□□□ 0.693e-7■■■■■ 27.3
SF3B1O75533 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.32■□□□□ 0.23e-7■■■■■ 27.3
SF3B1O75533 LSM5-201ENST00000223084 1295 ntTSL 213.78□□□□□ -0.23e-7■■■■■ 27.3
SF3B1O75533 LSM5-202ENST00000409292 538 ntTSL 2 BASIC8.61□□□□□ -1.033e-7■■■■■ 27.3
SF3B1O75533 LSM5-210ENST00000480956 1736 ntTSL 37.8□□□□□ -1.163e-7■■■■■ 27.3
SF3B1O75533 LSM5-203ENST00000409782 649 ntTSL 5 BASIC6.4□□□□□ -1.393e-7■■■■■ 27.3
SF3B1O75533 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.57□□□□□ -1.683e-7■■■■■ 27.3
SF3B1O75533 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.57□□□□□ -1.683e-7■■■■■ 27.3
SF3B1O75533 LSM5-209ENST00000468872 636 ntTSL 23.92□□□□□ -1.783e-7■■■■■ 27.3
SF3B1O75533 FURIN-203ENST00000559353 587 ntTSL 317.25■□□□□ 0.353e-6■■■■■ 27.3
SF3B1O75533 ADGRV1-204ENST00000504142 5047 ntTSL 56.24□□□□□ -1.415e-6■■■■■ 27.3
SF3B1O75533 ADGRV1-220ENST00000639676 3116 ntTSL 54.02□□□□□ -1.775e-6■■■■■ 27.3
SF3B1O75533 SRRM2-222ENST00000575009 1146 ntTSL 528.54■■■□□ 2.169e-7■■■■■ 27.3
SF3B1O75533 SRRM2-230ENST00000576924 3314 ntTSL 1 (best)16.87■□□□□ 0.299e-7■■■■■ 27.3
SF3B1O75533 SRRM2-208ENST00000571378 2870 ntTSL 1 (best)15.24■□□□□ 0.039e-7■■■■■ 27.3
SF3B1O75533 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.022e-6■■■■■ 27.2
SF3B1O75533 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.792e-6■■■■■ 27.2
SF3B1O75533 RBM3-201ENST00000354480 1884 ntTSL 2 BASIC13.2□□□□□ -0.32e-6■■■■■ 27.2
SF3B1O75533 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.85■□□□□ 0.453e-7■■■■■ 27.2
SF3B1O75533 ZNF692-207ENST00000468455 644 ntTSL 519.68■□□□□ 0.742e-7■■■■■ 27.1
SF3B1O75533 ZNF692-216ENST00000491971 805 ntTSL 213.46□□□□□ -0.252e-7■■■■■ 27.1
SF3B1O75533 RPS2-212ENST00000532746 931 ntTSL 39.82□□□□□ -0.842e-6■■■■■ 27.1
SF3B1O75533 RPS2-214ENST00000533186 625 ntTSL 39.82□□□□□ -0.842e-6■■■■■ 27.1
SF3B1O75533 CPED1-209ENST00000520801 553 ntTSL 412.5□□□□□ -0.411e-6■■■■■ 27.1
SF3B1O75533 ELP2-208ENST00000536373 759 ntTSL 34.35□□□□□ -1.711e-6■■■■■ 27.1
SF3B1O75533 KIF2C-205ENST00000455186 908 ntTSL 511.79□□□□□ -0.524e-6■■■■■ 27.1
SF3B1O75533 TIMM17A-201ENST00000367287 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.573e-11■■■■■ 27.1
SF3B1O75533 TIMM17A-202ENST00000478378 821 ntTSL 37.51□□□□□ -1.213e-11■■■■■ 27.1
SF3B1O75533 TIMM17A-203ENST00000482943 2523 ntTSL 27.01□□□□□ -1.293e-11■■■■■ 27.1
SF3B1O75533 CLK1-211ENST00000481641 690 ntTSL 420.41■□□□□ 0.865e-6■■■■■ 27.1
SF3B1O75533 NUMA1-223ENST00000542977 2766 ntAPPRIS ALT2 TSL 213.71□□□□□ -0.215e-6■■■■■ 27.1
SF3B1O75533 CLK1-212ENST00000482590 626 ntTSL 26.8□□□□□ -1.325e-6■■■■■ 27.1
SF3B1O75533 CLK1-213ENST00000492793 596 ntTSL 42.94□□□□□ -1.945e-6■■■■■ 27.1
SF3B1O75533 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.052e-6■■■■■ 27
SF3B1O75533 H3F3A-203ENST00000366815 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.462e-6■■■■■ 27
SF3B1O75533 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.113e-7■■■■■ 27
SF3B1O75533 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.236e-7■■■■■ 27
SF3B1O75533 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC15.32■□□□□ 0.042e-8■■■■■ 27
SF3B1O75533 SNHG25-201ENST00000580828 106 ntTSL 213.33□□□□□ -0.282e-8■■■■■ 27
SF3B1O75533 ARID1A-216ENST00000637465 699 ntTSL 54.46□□□□□ -1.691e-7■■■■■ 26.9
SF3B1O75533 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.479e-7■■■■■ 26.9
SF3B1O75533 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.039e-7■■■■■ 26.9
SF3B1O75533 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.79□□□□□ -1.489e-7■■■■■ 26.9
SF3B1O75533 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.59□□□□□ -1.529e-7■■■■■ 26.9
SF3B1O75533 SMG1P3-201ENST00000435197 416 ntTSL 320.02■□□□□ 0.83e-6■■■■■ 26.9
SF3B1O75533 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.384e-6■■■■■ 26.9
SF3B1O75533 CMAS-202ENST00000534981 1575 ntTSL 1 (best)21.01■□□□□ 0.954e-6■■■■■ 26.9
SF3B1O75533 CMAS-203ENST00000535610 854 ntTSL 520.43■□□□□ 0.864e-6■■■■■ 26.9
SF3B1O75533 SLC6A8-210ENST00000485324 2401 ntTSL 220.81■□□□□ 0.927e-7■■■■■ 26.9
SF3B1O75533 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.36■□□□□ 0.377e-7■■■■■ 26.9
SF3B1O75533 FDPS-217ENST00000492244 673 ntTSL 313.09□□□□□ -0.312e-6■■■■■ 26.9
SF3B1O75533 FDPS-218ENST00000492887 554 ntTSL 28.53□□□□□ -1.042e-6■■■■■ 26.9
SF3B1O75533 FASN-207ENST00000635197 627 ntTSL 317.55■□□□□ 0.45e-7■■■■■ 26.9
SF3B1O75533 NAP1L4-209ENST00000492594 570 ntTSL 319.51■□□□□ 0.711e-7■■■■■ 26.9
SF3B1O75533 EEF1AKMT2-202ENST00000464099 1013 ntTSL 1 (best)28.31■■■□□ 2.121e-7■■■■■ 26.8
SF3B1O75533 RNF114-205ENST00000623732 569 ntTSL 526.45■■□□□ 1.831e-7■■■■■ 26.8
SF3B1O75533 RNF114-208ENST00000625177 580 ntTSL 326.19■■□□□ 1.781e-7■■■■■ 26.8
SF3B1O75533 CDC42SE2-207ENST00000504701 567 ntTSL 424.89■■□□□ 1.581e-7■■■■■ 26.8
SF3B1O75533 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC23.4■■□□□ 1.341e-7■■■■■ 26.8
SF3B1O75533 FLCN-205ENST00000417064 757 ntTSL 222.93■■□□□ 1.261e-7■■■■■ 26.8
SF3B1O75533 RNF114-203ENST00000622999 2438 ntTSL 221.85■■□□□ 1.091e-7■■■■■ 26.8
SF3B1O75533 RNF114-204ENST00000623528 624 ntTSL 321.64■■□□□ 1.051e-7■■■■■ 26.8
SF3B1O75533 RNF114-206ENST00000624620 565 ntTSL 221.28■■□□□ 11e-7■■■■■ 26.8
SF3B1O75533 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.21■□□□□ 0.991e-7■■■■■ 26.8
SF3B1O75533 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.751e-7■■■■■ 26.8
SF3B1O75533 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.671e-7■■■■■ 26.8
SF3B1O75533 ANKS6-204ENST00000466120 646 ntTSL 218.55■□□□□ 0.561e-7■■■■■ 26.8
SF3B1O75533 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.19■□□□□ 0.51e-7■■■■■ 26.8
SF3B1O75533 SERHL2-205ENST00000416156 1669 ntTSL 217.76■□□□□ 0.431e-7■■■■■ 26.8
SF3B1O75533 SERHL2-208ENST00000477564 2096 ntTSL 217.32■□□□□ 0.361e-7■■■■■ 26.8
SF3B1O75533 FLCN-204ENST00000389171 2523 ntTSL 216.97■□□□□ 0.311e-7■■■■■ 26.8
SF3B1O75533 CDC42SE2-209ENST00000506419 458 ntTSL 315.81■□□□□ 0.121e-7■■■■■ 26.8
SF3B1O75533 EEF1AKMT2-203ENST00000466270 3587 ntTSL 1 (best)15.36■□□□□ 0.051e-7■■■■■ 26.8
SF3B1O75533 IRF3-218ENST00000597369 550 ntTSL 214.5□□□□□ -0.091e-7■■■■■ 26.8
SF3B1O75533 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.151e-7■■■■■ 26.8
SF3B1O75533 SERHL2-209ENST00000527167 1712 ntTSL 514.04□□□□□ -0.161e-7■■■■■ 26.8
SF3B1O75533 SERHL2-202ENST00000335879 753 ntTSL 1 (best) BASIC12.2□□□□□ -0.461e-7■■■■■ 26.8
SF3B1O75533 FLCN-208ENST00000473853 384 ntTSL 59.23□□□□□ -0.931e-7■■■■■ 26.8
SF3B1O75533 SETD2-207ENST00000484689 561 ntTSL 49.14□□□□□ -0.951e-7■■■■■ 26.8
SF3B1O75533 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.2□□□□□ -1.261e-7■■■■■ 26.8
SF3B1O75533 NEMF-214ENST00000557193 737 ntTSL 1 (best)7.19□□□□□ -1.261e-7■■■■■ 26.8
SF3B1O75533 NEMF-209ENST00000556074 3047 ntTSL 1 (best)6.98□□□□□ -1.291e-7■■■■■ 26.8
SF3B1O75533 ATP2C1-223ENST00000515854 561 ntTSL 44.65□□□□□ -1.671e-7■■■■■ 26.8
SF3B1O75533 NEMF-204ENST00000554275 873 ntTSL 33.44□□□□□ -1.861e-7■■■■■ 26.8
SF3B1O75533 CDC42SE2-211ENST00000511432 286 ntTSL 53.42□□□□□ -1.861e-7■■■■■ 26.8
SF3B1O75533 NEMF-211ENST00000556691 2062 ntTSL 23.14□□□□□ -1.911e-7■■■■■ 26.8
SF3B1O75533 CDC42SE2-205ENST00000502840 539 ntTSL 42.98□□□□□ -1.931e-7■■■■■ 26.8
SF3B1O75533 SRRM2-224ENST00000575870 696 ntTSL 311.22□□□□□ -0.612e-6■■■■□ 26.7
SF3B1O75533 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.472e-7■■■■□ 26.7
SF3B1O75533 PPP4R2-203ENST00000470976 1033 ntTSL 229.38■■■□□ 2.293e-8■■■■□ 26.7
SF3B1O75533 PPP4R2-205ENST00000482242 771 ntTSL 329.01■■■□□ 2.233e-8■■■■□ 26.7
SF3B1O75533 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.172e-6■■■■□ 26.7
Retrieved 100 of 46,956 protein–RNA pairs in 3726.7 ms