RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 AEBP2Q6ZN18 517 aaPredicted RBP33.83■■■■□ 3.01
CLK1-212ENST00000482590 CHIC1Q5VXU3 224 aa32.15■■■□□ 2.74
CLK1-212ENST00000482590 SENP3Q9H4L4 574 aaPredicted RBP28.79■■■□□ 2.2
CLK1-212ENST00000482590 PHF23Q9BUL5 403 aaPredicted RBP28.45■■■□□ 2.14
CLK1-212ENST00000482590 FOXD1Q16676 465 aa26.87■■□□□ 1.89
CLK1-212ENST00000482590 PLPPR3Q6T4P5 718 aa25.69■■□□□ 1.7
CLK1-212ENST00000482590 PPP6R1Q9UPN7 881 aa25.19■■□□□ 1.62
CLK1-212ENST00000482590 ADRA2BP18089 450 aa25.1■■□□□ 1.61
CLK1-212ENST00000482590 PIAS4Q8N2W9 510 aaPredicted RBP25.09■■□□□ 1.61
CLK1-212ENST00000482590 MSH5O43196 834 aa25.07■■□□□ 1.6
CLK1-212ENST00000482590 POTEDQ86YR6 584 aa24.42■■□□□ 1.5
CLK1-212ENST00000482590 MAPK8IP2Q13387 824 aaPredicted RBP23.05■■□□□ 1.28
CLK1-212ENST00000482590 SCAF1Q9H7N4 1312 aaKnown RBP22.9■■□□□ 1.26
CLK1-212ENST00000482590 DMRT2Q9Y5R5 561 aa22.86■■□□□ 1.25
CLK1-212ENST00000482590 PPP4R3CPQ6ZMV5 832 aa22.54■■□□□ 1.2
CLK1-212ENST00000482590 CNKSR2Q8WXI2 1034 aa22.09■■□□□ 1.13
CLK1-212ENST00000482590 HOXD11P31277 338 aaPredicted RBP22.05■■□□□ 1.12
CLK1-212ENST00000482590 DCAF8L1A6NGE4 600 aa21.89■■□□□ 1.09
CLK1-212ENST00000482590 RNF216Q9NWF9 866 aaPredicted RBP21.88■■□□□ 1.09
CLK1-212ENST00000482590 NCBP3Q53F19 620 aaKnown RBP21.66■■□□□ 1.06
CLK1-212ENST00000482590 CACNB1Q02641 598 aaPredicted RBP21.49■■□□□ 1.03
CLK1-212ENST00000482590 RNF39Q9H2S5 420 aa21.43■■□□□ 1.02
CLK1-212ENST00000482590 NPM3O75607 178 aaKnown RBP21.39■■□□□ 1.01
CLK1-212ENST00000482590 DNAJC5BQ9UF47 199 aa21.25■□□□□ 0.99
CLK1-212ENST00000482590 C1QBPQ07021 282 aaKnown RBP21.1■□□□□ 0.97
CLK1-212ENST00000482590 KCNA4P22459 653 aa21.04■□□□□ 0.96
CLK1-212ENST00000482590 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.98■□□□□ 0.952e-8■■■□□ 15.5
CLK1-212ENST00000482590 U3KPZ7 1027 aaPredicted RBP20.58■□□□□ 0.89
CLK1-212ENST00000482590 SLC4A2P04920 1241 aa20.44■□□□□ 0.86
CLK1-212ENST00000482590 SPINK5Q9NQ38 1064 aaPredicted RBP20.27■□□□□ 0.84
CLK1-212ENST00000482590 CAPN15O75808 1086 aa20.2■□□□□ 0.82
CLK1-212ENST00000482590 DSG3P32926 999 aa20.09■□□□□ 0.81
CLK1-212ENST00000482590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.95■□□□□ 0.78
CLK1-212ENST00000482590 HNRNPUL2Q1KMD3 747 aaKnown RBP19.95■□□□□ 0.78
CLK1-212ENST00000482590 APLP2Q06481 763 aa19.93■□□□□ 0.78
CLK1-212ENST00000482590 TRHP20396 242 aaPredicted RBP19.89■□□□□ 0.77
CLK1-212ENST00000482590 SAMD1Q6SPF0 538 aaPredicted RBP19.86■□□□□ 0.77
CLK1-212ENST00000482590 SLC4A1APQ9BWU0 796 aaKnown RBP19.85■□□□□ 0.77
CLK1-212ENST00000482590 ZNF219Q9P2Y4 722 aaPredicted RBP19.84■□□□□ 0.77
CLK1-212ENST00000482590 ABCB7O75027 752 aa19.76■□□□□ 0.75
CLK1-212ENST00000482590 MYCNP04198 464 aaPredicted RBP19.75■□□□□ 0.75
CLK1-212ENST00000482590 FOXD4L1Q9NU39 408 aa19.58■□□□□ 0.72
CLK1-212ENST00000482590 POLA2Q14181 598 aa19.39■□□□□ 0.69
CLK1-212ENST00000482590 ZBTB22O15209 634 aa19.37■□□□□ 0.69
CLK1-212ENST00000482590 ATF5Q9Y2D1 282 aaPredicted RBP19.35■□□□□ 0.69
CLK1-212ENST00000482590 POTEHQ6S545 545 aa19.13■□□□□ 0.65
CLK1-212ENST00000482590 RBM42Q9BTD8 480 aaKnown RBP19.12■□□□□ 0.65
CLK1-212ENST00000482590 ATXN8OSP0DMR3 200 aa18.97■□□□□ 0.63
CLK1-212ENST00000482590 ZBTB12Q9Y330 459 aaPredicted RBP18.95■□□□□ 0.62
CLK1-212ENST00000482590 OSCARQ8IYS5 282 aa18.77■□□□□ 0.6
CLK1-212ENST00000482590 CHRDL2Q6WN34 429 aa18.72■□□□□ 0.59
CLK1-212ENST00000482590 AKT1S1Q96B36 256 aa18.71■□□□□ 0.59
CLK1-212ENST00000482590 REM2Q8IYK8 340 aaPredicted RBP18.56■□□□□ 0.56
CLK1-212ENST00000482590 FBLN2P98095 1184 aa18.52■□□□□ 0.56
CLK1-212ENST00000482590 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
CLK1-212ENST00000482590 MKRN4PQ13434 485 aaPredicted RBP18.46■□□□□ 0.55
CLK1-212ENST00000482590 SPDYE2BA6NHP3 402 aa18.39■□□□□ 0.53
CLK1-212ENST00000482590 SPDYE6P0CI01 402 aa18.39■□□□□ 0.53
CLK1-212ENST00000482590 SPDYE2Q495Y8 402 aa18.39■□□□□ 0.53
CLK1-212ENST00000482590 PITPNM1O00562 1244 aa18.37■□□□□ 0.53
CLK1-212ENST00000482590 PIP4P2Q8N4L2 257 aa18.3■□□□□ 0.52
CLK1-212ENST00000482590 EHMT2Q96KQ7 1210 aa18.28■□□□□ 0.52
CLK1-212ENST00000482590 FXR2P51116 673 aaKnown RBP eCLIP18.19■□□□□ 0.5
CLK1-212ENST00000482590 ZNF692Q9BU19 519 aaPredicted RBP18.19■□□□□ 0.5
CLK1-212ENST00000482590 SSUH2Q9Y2M2 353 aa18.18■□□□□ 0.5
CLK1-212ENST00000482590 SPDYE1Q8NFV5 336 aaPredicted RBP18.05■□□□□ 0.48
CLK1-212ENST00000482590 CLEC11AQ9Y240 323 aa18.03■□□□□ 0.48
CLK1-212ENST00000482590 SP7Q8TDD2 431 aaPredicted RBP17.96■□□□□ 0.47
CLK1-212ENST00000482590 PABPN1Q86U42 306 aaKnown RBP eCLIP17.94■□□□□ 0.46
CLK1-212ENST00000482590 HAX1O00165 279 aa17.93■□□□□ 0.46
CLK1-212ENST00000482590 PRKAR2AP13861 404 aaKnown RBP17.88■□□□□ 0.45
CLK1-212ENST00000482590 EVX2Q03828 476 aa17.77■□□□□ 0.44
CLK1-212ENST00000482590 PRR29P0C7W0 189 aa17.74■□□□□ 0.43
CLK1-212ENST00000482590 CHADLQ6NUI6 762 aa17.71■□□□□ 0.43
CLK1-212ENST00000482590 C19orf67A6NJJ6 358 aa17.61■□□□□ 0.41
CLK1-212ENST00000482590 SPDYE4A6NLX3 237 aa17.58■□□□□ 0.4
CLK1-212ENST00000482590 FARP1Q9Y4F1 1045 aaPredicted RBP17.44■□□□□ 0.38
CLK1-212ENST00000482590 STAG3Q9UJ98 1225 aa17.42■□□□□ 0.38
CLK1-212ENST00000482590 GABBR2O75899 941 aa17.34■□□□□ 0.37
CLK1-212ENST00000482590 CREBZFQ9NS37 354 aa17.34■□□□□ 0.37
CLK1-212ENST00000482590 CD44P16070 742 aaKnown RBP17.31■□□□□ 0.36
CLK1-212ENST00000482590 PROM2Q8N271 834 aa17.19■□□□□ 0.34
CLK1-212ENST00000482590 ZRANB1Q9UGI0 708 aa17.08■□□□□ 0.32
CLK1-212ENST00000482590 MNX1P50219 401 aaPredicted RBP17.07■□□□□ 0.32
CLK1-212ENST00000482590 ZNF579Q8NAF0 562 aaKnown RBP17.05■□□□□ 0.32
CLK1-212ENST00000482590 CLCN6P51797 869 aa17.03■□□□□ 0.32
CLK1-212ENST00000482590 POTEIP0CG38 1075 aa17■□□□□ 0.31
CLK1-212ENST00000482590 NPM1P06748 294 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLK1-212ENST00000482590 PAK3O75914 559 aaPredicted RBP16.91■□□□□ 0.3
CLK1-212ENST00000482590 GALR2O43603 387 aaPredicted RBP16.86■□□□□ 0.29
CLK1-212ENST00000482590 PHF12Q96QT6 1004 aa16.86■□□□□ 0.29
CLK1-212ENST00000482590 DCBLD2Q96PD2 775 aa16.85■□□□□ 0.29
CLK1-212ENST00000482590 LHX8Q68G74 356 aa16.84■□□□□ 0.29
CLK1-212ENST00000482590 FKBP8Q14318 412 aa16.76■□□□□ 0.27
CLK1-212ENST00000482590 MIER1Q8N108 512 aa16.76■□□□□ 0.27
CLK1-212ENST00000482590 TSPYL2Q9H2G4 693 aaPredicted RBP16.7■□□□□ 0.26
CLK1-212ENST00000482590 PLEKHG5O94827 1062 aa16.69■□□□□ 0.26
CLK1-212ENST00000482590 MS4A3Q96HJ5 214 aa16.64■□□□□ 0.25
CLK1-212ENST00000482590 CCDC61Q9Y6R9 512 aa16.64■□□□□ 0.25
CLK1-212ENST00000482590 PLCD3Q8N3E9 789 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms