RNA–Protein interactions for RNA: ENST00000492793.1

CLK1-213, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 596 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-213ENST00000492793 AEBP2Q6ZN18 517 aaPredicted RBP18.1■□□□□ 0.49
CLK1-213ENST00000492793 CHIC1Q5VXU3 224 aa17.96■□□□□ 0.47
CLK1-213ENST00000492793 PHF23Q9BUL5 403 aaPredicted RBP15.8■□□□□ 0.12
CLK1-213ENST00000492793 SENP3Q9H4L4 574 aaPredicted RBP15.35■□□□□ 0.05
CLK1-213ENST00000492793 PLPPR3Q6T4P5 718 aa14.74□□□□□ -0.05
CLK1-213ENST00000492793 FOXD1Q16676 465 aa14.21□□□□□ -0.13
CLK1-213ENST00000492793 ADRA2BP18089 450 aa13.93□□□□□ -0.18
CLK1-213ENST00000492793 PPP6R1Q9UPN7 881 aa13.88□□□□□ -0.19
CLK1-213ENST00000492793 PIAS4Q8N2W9 510 aaPredicted RBP13.53□□□□□ -0.24
CLK1-213ENST00000492793 MSH5O43196 834 aa13.14□□□□□ -0.31
CLK1-213ENST00000492793 POTEDQ86YR6 584 aa13.12□□□□□ -0.31
CLK1-213ENST00000492793 KCNA4P22459 653 aa13.04□□□□□ -0.32
CLK1-213ENST00000492793 PPP4R3CPQ6ZMV5 832 aa13.03□□□□□ -0.32
CLK1-213ENST00000492793 NCBP3Q53F19 620 aaKnown RBP12.8□□□□□ -0.36
CLK1-213ENST00000492793 SCAF1Q9H7N4 1312 aaKnown RBP12.76□□□□□ -0.37
CLK1-213ENST00000492793 CNKSR2Q8WXI2 1034 aa12.59□□□□□ -0.39
CLK1-213ENST00000492793 NPM3O75607 178 aaKnown RBP12.56□□□□□ -0.4
CLK1-213ENST00000492793 MAPK8IP2Q13387 824 aaPredicted RBP12.55□□□□□ -0.4
CLK1-213ENST00000492793 EHMT2Q96KQ7 1210 aa12.53□□□□□ -0.4
CLK1-213ENST00000492793 SLC4A1APQ9BWU0 796 aaKnown RBP12.5□□□□□ -0.41
CLK1-213ENST00000492793 DMRT2Q9Y5R5 561 aa12.27□□□□□ -0.45
CLK1-213ENST00000492793 RNF216Q9NWF9 866 aaPredicted RBP12.25□□□□□ -0.45
CLK1-213ENST00000492793 CSRNP3Q8WYN3 585 aa12.14□□□□□ -0.47
CLK1-213ENST00000492793 HOXD11P31277 338 aaPredicted RBP12.09□□□□□ -0.47
CLK1-213ENST00000492793 DNAJC5BQ9UF47 199 aa11.99□□□□□ -0.49
CLK1-213ENST00000492793 ZBTB22O15209 634 aa11.96□□□□□ -0.49
CLK1-213ENST00000492793 FOXD4L1Q9NU39 408 aa11.93□□□□□ -0.5
CLK1-213ENST00000492793 DCAF8L1A6NGE4 600 aa11.92□□□□□ -0.5
CLK1-213ENST00000492793 SLC4A2P04920 1241 aa11.76□□□□□ -0.53
CLK1-213ENST00000492793 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.67□□□□□ -0.542e-8■■□□□ 14.1
CLK1-213ENST00000492793 MYCNP04198 464 aaPredicted RBP11.62□□□□□ -0.55
CLK1-213ENST00000492793 ATXN8OSP0DMR3 200 aa11.43□□□□□ -0.58
CLK1-213ENST00000492793 U3KPZ7 1027 aaPredicted RBP11.42□□□□□ -0.58
CLK1-213ENST00000492793 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.41□□□□□ -0.58
CLK1-213ENST00000492793 HNRNPUL2Q1KMD3 747 aaKnown RBP11.41□□□□□ -0.58
CLK1-213ENST00000492793 SAMD1Q6SPF0 538 aaPredicted RBP11.38□□□□□ -0.59
CLK1-213ENST00000492793 CACNB1Q02641 598 aaPredicted RBP11.31□□□□□ -0.6
CLK1-213ENST00000492793 ATF5Q9Y2D1 282 aaPredicted RBP11.28□□□□□ -0.6
CLK1-213ENST00000492793 APLP2Q06481 763 aa11.25□□□□□ -0.61
CLK1-213ENST00000492793 RNF39Q9H2S5 420 aa11.24□□□□□ -0.61
CLK1-213ENST00000492793 TRHP20396 242 aaPredicted RBP11.09□□□□□ -0.63
CLK1-213ENST00000492793 ZNF219Q9P2Y4 722 aaPredicted RBP11.09□□□□□ -0.63
CLK1-213ENST00000492793 CAPN15O75808 1086 aa11.07□□□□□ -0.64
CLK1-213ENST00000492793 SPINK5Q9NQ38 1064 aaPredicted RBP11.06□□□□□ -0.64
CLK1-213ENST00000492793 C1QBPQ07021 282 aaKnown RBP11.04□□□□□ -0.64
CLK1-213ENST00000492793 FKBP8Q14318 412 aa11.04□□□□□ -0.64
CLK1-213ENST00000492793 POLA2Q14181 598 aa10.92□□□□□ -0.66
CLK1-213ENST00000492793 ABCB7O75027 752 aa10.88□□□□□ -0.67
CLK1-213ENST00000492793 FBLN2P98095 1184 aa10.86□□□□□ -0.67
CLK1-213ENST00000492793 MKRN4PQ13434 485 aaPredicted RBP10.77□□□□□ -0.69
CLK1-213ENST00000492793 SPDYE4A6NLX3 237 aa10.74□□□□□ -0.69
CLK1-213ENST00000492793 ZBTB12Q9Y330 459 aaPredicted RBP10.73□□□□□ -0.69
CLK1-213ENST00000492793 DSG3P32926 999 aa10.71□□□□□ -0.69
CLK1-213ENST00000492793 FBXO3Q9UK99 471 aa10.55□□□□□ -0.72
CLK1-213ENST00000492793 OSCARQ8IYS5 282 aa10.54□□□□□ -0.72
CLK1-213ENST00000492793 ZNF692Q9BU19 519 aaPredicted RBP10.52□□□□□ -0.73
CLK1-213ENST00000492793 AMER1Q5JTC6 1135 aaPredicted RBP10.51□□□□□ -0.73
CLK1-213ENST00000492793 RTN4Q9NQC3 1192 aaKnown RBP10.49□□□□□ -0.73
CLK1-213ENST00000492793 PROM2Q8N271 834 aa10.46□□□□□ -0.73
CLK1-213ENST00000492793 SPDYE2BA6NHP3 402 aa10.45□□□□□ -0.74
CLK1-213ENST00000492793 SPDYE6P0CI01 402 aa10.45□□□□□ -0.74
CLK1-213ENST00000492793 SPDYE2Q495Y8 402 aa10.45□□□□□ -0.74
CLK1-213ENST00000492793 VASPP50552 380 aaPredicted RBP10.37□□□□□ -0.75
CLK1-213ENST00000492793 PABPN1Q86U42 306 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLK1-213ENST00000492793 SSUH2Q9Y2M2 353 aa10.35□□□□□ -0.75
CLK1-213ENST00000492793 STAG3Q9UJ98 1225 aa10.26□□□□□ -0.77
CLK1-213ENST00000492793 KLHL34Q8N239 644 aa10.25□□□□□ -0.77
CLK1-213ENST00000492793 IFNLR1Q8IU57 520 aaPredicted RBP10.24□□□□□ -0.77
CLK1-213ENST00000492793 PLCD3Q8N3E9 789 aa10.24□□□□□ -0.77
CLK1-213ENST00000492793 RBM42Q9BTD8 480 aaKnown RBP10.24□□□□□ -0.77
CLK1-213ENST00000492793 POTEHQ6S545 545 aa10.23□□□□□ -0.77
CLK1-213ENST00000492793 MIER1Q8N108 512 aa10.21□□□□□ -0.77
CLK1-213ENST00000492793 PLEKHG5O94827 1062 aa10.17□□□□□ -0.78
CLK1-213ENST00000492793 AKT1S1Q96B36 256 aa10.15□□□□□ -0.78
CLK1-213ENST00000492793 CLEC11AQ9Y240 323 aa10.14□□□□□ -0.79
CLK1-213ENST00000492793 SPDYE1Q8NFV5 336 aaPredicted RBP10.11□□□□□ -0.79
CLK1-213ENST00000492793 SPOCK2Q92563 424 aa10.11□□□□□ -0.79
CLK1-213ENST00000492793 DCAF8L2P0C7V8 631 aa10.08□□□□□ -0.8
CLK1-213ENST00000492793 REM2Q8IYK8 340 aaPredicted RBP10.06□□□□□ -0.8
CLK1-213ENST00000492793 ZBTB47Q9UFB7 747 aaPredicted RBP10.05□□□□□ -0.8
CLK1-213ENST00000492793 PRR29P0C7W0 189 aa10.04□□□□□ -0.8
CLK1-213ENST00000492793 PKD2Q13563 968 aa9.98□□□□□ -0.81
CLK1-213ENST00000492793 CIZ1Q9ULV3 898 aaPredicted RBP9.98□□□□□ -0.81
CLK1-213ENST00000492793 ECM2O94769 699 aaPredicted RBP9.96□□□□□ -0.82
CLK1-213ENST00000492793 PITPNM1O00562 1244 aa9.95□□□□□ -0.82
CLK1-213ENST00000492793 SLC24A1O60721 1099 aa9.95□□□□□ -0.82
CLK1-213ENST00000492793 CREBZFQ9NS37 354 aa9.9□□□□□ -0.82
CLK1-213ENST00000492793 DCAF8Q5TAQ9 597 aa9.86□□□□□ -0.83
CLK1-213ENST00000492793 GSE1Q14687 1217 aa9.83□□□□□ -0.84
CLK1-213ENST00000492793 CHADLQ6NUI6 762 aa9.82□□□□□ -0.84
CLK1-213ENST00000492793 RGL2O15211 777 aa9.81□□□□□ -0.84
CLK1-213ENST00000492793 NPM1P06748 294 aaKnown RBP eCLIP9.81□□□□□ -0.84
CLK1-213ENST00000492793 NUBP1P53384 320 aa9.81□□□□□ -0.84
CLK1-213ENST00000492793 FAM212AQ96EL1 285 aa9.8□□□□□ -0.84
CLK1-213ENST00000492793 CHRDL2Q6WN34 429 aa9.79□□□□□ -0.84
CLK1-213ENST00000492793 MNX1P50219 401 aaPredicted RBP9.78□□□□□ -0.84
CLK1-213ENST00000492793 TRIM41Q8WV44 630 aa9.78□□□□□ -0.84
CLK1-213ENST00000492793 PRKAR2AP13861 404 aaKnown RBP9.74□□□□□ -0.85
CLK1-213ENST00000492793 RASEFQ8IZ41 740 aa9.73□□□□□ -0.85
CLK1-213ENST00000492793 CHGAP10645 457 aaKnown RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms