Protein–RNA interactions for Protein: P54105

CLNS1A, Methylosome subunit pICln, humanhuman

Known RBP Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1AP54105 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLNS1AP54105 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLNS1AP54105 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.16■□□□□ 0.98
CLNS1AP54105 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CLNS1AP54105 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CLNS1AP54105 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CLNS1AP54105 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.16■□□□□ 0.98
CLNS1AP54105 AL031848.2-201ENST00000607670 837 ntBASIC21.16■□□□□ 0.98
CLNS1AP54105 MIR6722-201ENST00000617286 78 ntBASIC21.16■□□□□ 0.98
CLNS1AP54105 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
CLNS1AP54105 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLNS1AP54105 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.15■□□□□ 0.98
CLNS1AP54105 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLNS1AP54105 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLNS1AP54105 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLNS1AP54105 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLNS1AP54105 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.15■□□□□ 0.98
CLNS1AP54105 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.15■□□□□ 0.98
CLNS1AP54105 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CLNS1AP54105 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.15■□□□□ 0.98
CLNS1AP54105 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.15■□□□□ 0.98
CLNS1AP54105 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLNS1AP54105 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
CLNS1AP54105 FAM99A-202ENST00000538190 1989 ntBASIC21.14■□□□□ 0.98
CLNS1AP54105 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLNS1AP54105 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CLNS1AP54105 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLNS1AP54105 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
CLNS1AP54105 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CLNS1AP54105 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLNS1AP54105 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.14■□□□□ 0.97
CLNS1AP54105 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.14■□□□□ 0.97
CLNS1AP54105 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLNS1AP54105 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLNS1AP54105 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLNS1AP54105 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CLNS1AP54105 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 FP325331.1-202ENST00000623531 1380 ntBASIC21.13■□□□□ 0.97
CLNS1AP54105 LINC01529-204ENST00000636474 1715 ntBASIC21.13■□□□□ 0.97
CLNS1AP54105 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CLNS1AP54105 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.13■□□□□ 0.97
CLNS1AP54105 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.13■□□□□ 0.97
CLNS1AP54105 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.13■□□□□ 0.97
CLNS1AP54105 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
CLNS1AP54105 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLNS1AP54105 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.12■□□□□ 0.97
CLNS1AP54105 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLNS1AP54105 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLNS1AP54105 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.12■□□□□ 0.97
CLNS1AP54105 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 AC087289.5-201ENST00000586076 3175 ntBASIC21.11■□□□□ 0.97
CLNS1AP54105 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.11■□□□□ 0.97
CLNS1AP54105 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.11■□□□□ 0.97
CLNS1AP54105 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.11■□□□□ 0.97
CLNS1AP54105 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.11■□□□□ 0.97
CLNS1AP54105 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLNS1AP54105 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CLNS1AP54105 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.11■□□□□ 0.97
CLNS1AP54105 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms