Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.59■■□□□ 1.05
CXCL12P48061 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.59■■□□□ 1.05
CXCL12P48061 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.59■■□□□ 1.05
CXCL12P48061 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CXCL12P48061 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CXCL12P48061 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.58■■□□□ 1.05
CXCL12P48061 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CXCL12P48061 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.58■■□□□ 1.05
CXCL12P48061 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.58■■□□□ 1.05
CXCL12P48061 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CXCL12P48061 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
CXCL12P48061 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.58■■□□□ 1.05
CXCL12P48061 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.58■■□□□ 1.05
CXCL12P48061 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.58■■□□□ 1.05
CXCL12P48061 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CXCL12P48061 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CXCL12P48061 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CXCL12P48061 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CXCL12P48061 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CXCL12P48061 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.57■■□□□ 1.04
CXCL12P48061 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.57■■□□□ 1.04
CXCL12P48061 ESRRAP1-201ENST00000400596 1257 ntBASIC21.57■■□□□ 1.04
CXCL12P48061 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 BX276092.2-201ENST00000417668 665 ntBASIC21.57■■□□□ 1.04
CXCL12P48061 AC093787.1-201ENST00000450396 207 ntBASIC21.57■■□□□ 1.04
CXCL12P48061 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.57■■□□□ 1.04
CXCL12P48061 AC016405.3-201ENST00000607710 860 ntBASIC21.57■■□□□ 1.04
CXCL12P48061 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CXCL12P48061 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CXCL12P48061 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CXCL12P48061 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.56■■□□□ 1.04
CXCL12P48061 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CXCL12P48061 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CXCL12P48061 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CXCL12P48061 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CXCL12P48061 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.56■■□□□ 1.04
CXCL12P48061 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 AC098590.1-201ENST00000468126 897 ntBASIC21.56■■□□□ 1.04
CXCL12P48061 AC097658.1-201ENST00000475555 843 ntBASIC21.56■■□□□ 1.04
CXCL12P48061 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.56■■□□□ 1.04
CXCL12P48061 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
CXCL12P48061 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.55■■□□□ 1.04
CXCL12P48061 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.55■■□□□ 1.04
CXCL12P48061 EEF1DP3-203ENST00000566025 782 ntBASIC21.55■■□□□ 1.04
CXCL12P48061 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.55■■□□□ 1.04
CXCL12P48061 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 AC053503.5-201ENST00000601508 636 ntBASIC21.55■■□□□ 1.04
CXCL12P48061 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.55■■□□□ 1.04
CXCL12P48061 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.55■■□□□ 1.04
CXCL12P48061 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CXCL12P48061 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CXCL12P48061 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.54■■□□□ 1.04
CXCL12P48061 GCSHP5-201ENST00000443090 522 ntBASIC21.54■■□□□ 1.04
CXCL12P48061 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.54■■□□□ 1.04
CXCL12P48061 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.54■■□□□ 1.04
CXCL12P48061 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.54■■□□□ 1.04
CXCL12P48061 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.54■■□□□ 1.04
CXCL12P48061 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.54■■□□□ 1.04
CXCL12P48061 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CXCL12P48061 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CXCL12P48061 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.53■■□□□ 1.04
CXCL12P48061 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.53■■□□□ 1.04
CXCL12P48061 AC083880.1-201ENST00000608266 535 ntBASIC21.53■■□□□ 1.04
CXCL12P48061 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.53■■□□□ 1.04
CXCL12P48061 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
CXCL12P48061 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CXCL12P48061 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CXCL12P48061 ABCB10P4-201ENST00000566803 2184 ntBASIC21.53■■□□□ 1.04
CXCL12P48061 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CXCL12P48061 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.53■■□□□ 1.04
CXCL12P48061 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.52■■□□□ 1.04
CXCL12P48061 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.52■■□□□ 1.04
CXCL12P48061 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CXCL12P48061 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.52■■□□□ 1.04
CXCL12P48061 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms