Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOXO15266 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHOXO15266 AC103834.1-201ENST00000520383 144 ntBASIC18.31■□□□□ 0.52
SHOXO15266 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SHOXO15266 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOXO15266 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOXO15266 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOXO15266 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHOXO15266 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHOXO15266 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHOXO15266 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 ESRRAP2-201ENST00000418437 1549 ntBASIC18.3■□□□□ 0.52
SHOXO15266 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
SHOXO15266 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
SHOXO15266 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.3■□□□□ 0.52
SHOXO15266 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.3■□□□□ 0.52
SHOXO15266 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.3■□□□□ 0.52
SHOXO15266 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.3■□□□□ 0.52
SHOXO15266 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.3■□□□□ 0.52
SHOXO15266 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SHOXO15266 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHOXO15266 AC092053.2-201ENST00000640557 1818 ntBASIC18.3■□□□□ 0.52
SHOXO15266 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.3■□□□□ 0.52
SHOXO15266 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.29■□□□□ 0.52
SHOXO15266 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SHOXO15266 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.29■□□□□ 0.52
SHOXO15266 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.29■□□□□ 0.52
SHOXO15266 AC004448.1-201ENST00000458332 883 ntBASIC18.29■□□□□ 0.52
SHOXO15266 AC103724.3-201ENST00000564481 992 ntBASIC18.29■□□□□ 0.52
SHOXO15266 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.29■□□□□ 0.52
SHOXO15266 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHOXO15266 AC092068.2-201ENST00000590491 1708 ntBASIC18.29■□□□□ 0.52
SHOXO15266 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHOXO15266 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.28■□□□□ 0.52
SHOXO15266 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.28■□□□□ 0.52
SHOXO15266 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.28■□□□□ 0.52
SHOXO15266 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.28■□□□□ 0.52
SHOXO15266 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOXO15266 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOXO15266 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SHOXO15266 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHOXO15266 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHOXO15266 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SHOXO15266 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHOXO15266 AC087289.5-201ENST00000586076 3175 ntBASIC18.28■□□□□ 0.52
SHOXO15266 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOXO15266 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOXO15266 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHOXO15266 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHOXO15266 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.27■□□□□ 0.52
SHOXO15266 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOXO15266 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.27■□□□□ 0.52
SHOXO15266 AL031848.2-201ENST00000607670 837 ntBASIC18.27■□□□□ 0.52
SHOXO15266 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHOXO15266 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SHOXO15266 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.26■□□□□ 0.51
SHOXO15266 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.26■□□□□ 0.51
SHOXO15266 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SHOXO15266 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.26■□□□□ 0.51
SHOXO15266 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.26■□□□□ 0.51
SHOXO15266 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.26■□□□□ 0.51
SHOXO15266 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHOXO15266 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
SHOXO15266 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOXO15266 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.25■□□□□ 0.51
SHOXO15266 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.25■□□□□ 0.51
SHOXO15266 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms