Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SEMA3DO95025 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SEMA3DO95025 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SEMA3DO95025 OXCT2P1-201ENST00000447263 1535 ntBASIC20.68■□□□□ 0.9
SEMA3DO95025 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.68■□□□□ 0.9
SEMA3DO95025 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SEMA3DO95025 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SEMA3DO95025 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SEMA3DO95025 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.67■□□□□ 0.9
SEMA3DO95025 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SEMA3DO95025 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SEMA3DO95025 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
SEMA3DO95025 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.66■□□□□ 0.9
SEMA3DO95025 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
SEMA3DO95025 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SEMA3DO95025 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SEMA3DO95025 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SEMA3DO95025 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SEMA3DO95025 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SEMA3DO95025 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SEMA3DO95025 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.65■□□□□ 0.9
SEMA3DO95025 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SEMA3DO95025 OR7E47P-201ENST00000546390 1422 ntBASIC20.65■□□□□ 0.9
SEMA3DO95025 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SEMA3DO95025 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.65■□□□□ 0.9
SEMA3DO95025 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SEMA3DO95025 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
SEMA3DO95025 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.64■□□□□ 0.89
SEMA3DO95025 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEMA3DO95025 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEMA3DO95025 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SEMA3DO95025 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.64■□□□□ 0.89
SEMA3DO95025 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.64■□□□□ 0.89
SEMA3DO95025 AC096631.2-201ENST00000436136 790 ntBASIC20.64■□□□□ 0.89
SEMA3DO95025 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.64■□□□□ 0.89
SEMA3DO95025 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEMA3DO95025 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SEMA3DO95025 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.63■□□□□ 0.89
SEMA3DO95025 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SEMA3DO95025 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.63■□□□□ 0.89
SEMA3DO95025 AC233992.3-201ENST00000607491 485 ntBASIC20.63■□□□□ 0.89
SEMA3DO95025 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SEMA3DO95025 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.63■□□□□ 0.89
SEMA3DO95025 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SEMA3DO95025 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 LINC00565-201ENST00000562710 2331 ntBASIC20.62■□□□□ 0.89
SEMA3DO95025 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.62■□□□□ 0.89
SEMA3DO95025 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SEMA3DO95025 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SEMA3DO95025 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.62■□□□□ 0.89
SEMA3DO95025 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.62■□□□□ 0.89
SEMA3DO95025 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.62■□□□□ 0.89
SEMA3DO95025 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.62■□□□□ 0.89
SEMA3DO95025 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.62■□□□□ 0.89
SEMA3DO95025 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.62■□□□□ 0.89
SEMA3DO95025 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SEMA3DO95025 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SEMA3DO95025 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SEMA3DO95025 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.61■□□□□ 0.89
SEMA3DO95025 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SEMA3DO95025 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms