Protein–RNA interactions for Protein: Q9UMX0

UBQLN1, Ubiquilin-1, humanhuman

Known RBP Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN1Q9UMX0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
UBQLN1Q9UMX0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
UBQLN1Q9UMX0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
UBQLN1Q9UMX0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
UBQLN1Q9UMX0 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.35■■■□□ 2.29
UBQLN1Q9UMX0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
UBQLN1Q9UMX0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
UBQLN1Q9UMX0 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
UBQLN1Q9UMX0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
UBQLN1Q9UMX0 AC120057.4-201ENST00000624722 1615 ntBASIC29.32■■■□□ 2.28
UBQLN1Q9UMX0 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.31■■■□□ 2.28
UBQLN1Q9UMX0 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
UBQLN1Q9UMX0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.3■■■□□ 2.28
UBQLN1Q9UMX0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
UBQLN1Q9UMX0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.29■■■□□ 2.28
UBQLN1Q9UMX0 AP006261.1-201ENST00000584783 668 ntBASIC29.29■■■□□ 2.28
UBQLN1Q9UMX0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.28■■■□□ 2.28
UBQLN1Q9UMX0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
UBQLN1Q9UMX0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.26■■■□□ 2.27
UBQLN1Q9UMX0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
UBQLN1Q9UMX0 MIR762-201ENST00000390236 83 ntBASIC29.23■■■□□ 2.27
UBQLN1Q9UMX0 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.23■■■□□ 2.27
UBQLN1Q9UMX0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.22■■■□□ 2.27
UBQLN1Q9UMX0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC29.21■■■□□ 2.27
UBQLN1Q9UMX0 AL162393.1-201ENST00000437852 946 ntBASIC29.21■■■□□ 2.27
UBQLN1Q9UMX0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
UBQLN1Q9UMX0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.2■■■□□ 2.26
UBQLN1Q9UMX0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
UBQLN1Q9UMX0 RPS2P35-201ENST00000443417 897 ntBASIC29.19■■■□□ 2.26
UBQLN1Q9UMX0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC29.19■■■□□ 2.26
UBQLN1Q9UMX0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
UBQLN1Q9UMX0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
UBQLN1Q9UMX0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.18■■■□□ 2.26
UBQLN1Q9UMX0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.17■■■□□ 2.26
UBQLN1Q9UMX0 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
UBQLN1Q9UMX0 MIR3665-201ENST00000578708 105 ntBASIC29.16■■■□□ 2.26
UBQLN1Q9UMX0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.16■■■□□ 2.26
UBQLN1Q9UMX0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.15■■■□□ 2.26
UBQLN1Q9UMX0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.15■■■□□ 2.26
UBQLN1Q9UMX0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
UBQLN1Q9UMX0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
UBQLN1Q9UMX0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
UBQLN1Q9UMX0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
UBQLN1Q9UMX0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
UBQLN1Q9UMX0 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
UBQLN1Q9UMX0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
UBQLN1Q9UMX0 AC005559.1-201ENST00000589661 871 ntBASIC29.12■■■□□ 2.25
UBQLN1Q9UMX0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
UBQLN1Q9UMX0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.1■■■□□ 2.25
UBQLN1Q9UMX0 DUX4L28-201ENST00000623687 678 ntBASIC29.1■■■□□ 2.25
UBQLN1Q9UMX0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
UBQLN1Q9UMX0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
UBQLN1Q9UMX0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
UBQLN1Q9UMX0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
UBQLN1Q9UMX0 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
UBQLN1Q9UMX0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
UBQLN1Q9UMX0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
UBQLN1Q9UMX0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
UBQLN1Q9UMX0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
UBQLN1Q9UMX0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
UBQLN1Q9UMX0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
UBQLN1Q9UMX0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC29.03■■■□□ 2.24
UBQLN1Q9UMX0 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
UBQLN1Q9UMX0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
UBQLN1Q9UMX0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29■■■□□ 2.23
UBQLN1Q9UMX0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
UBQLN1Q9UMX0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
UBQLN1Q9UMX0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.99■■■□□ 2.23
UBQLN1Q9UMX0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.99■■■□□ 2.23
UBQLN1Q9UMX0 AC087741.3-201ENST00000624270 1347 ntBASIC28.98■■■□□ 2.23
UBQLN1Q9UMX0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.98■■■□□ 2.23
UBQLN1Q9UMX0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.98■■■□□ 2.23
UBQLN1Q9UMX0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
UBQLN1Q9UMX0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
UBQLN1Q9UMX0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
UBQLN1Q9UMX0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
UBQLN1Q9UMX0 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.95■■■□□ 2.23
UBQLN1Q9UMX0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
UBQLN1Q9UMX0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
UBQLN1Q9UMX0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.93■■■□□ 2.22
UBQLN1Q9UMX0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.93■■■□□ 2.22
UBQLN1Q9UMX0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
UBQLN1Q9UMX0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.91■■■□□ 2.22
UBQLN1Q9UMX0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
UBQLN1Q9UMX0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.9■■■□□ 2.22
UBQLN1Q9UMX0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
UBQLN1Q9UMX0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
UBQLN1Q9UMX0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.89■■■□□ 2.22
UBQLN1Q9UMX0 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
UBQLN1Q9UMX0 AC044849.2-201ENST00000606596 710 ntBASIC28.88■■■□□ 2.21
UBQLN1Q9UMX0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.87■■■□□ 2.21
UBQLN1Q9UMX0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
UBQLN1Q9UMX0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
UBQLN1Q9UMX0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
UBQLN1Q9UMX0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.86■■■□□ 2.21
UBQLN1Q9UMX0 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
UBQLN1Q9UMX0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC28.86■■■□□ 2.21
UBQLN1Q9UMX0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
UBQLN1Q9UMX0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
UBQLN1Q9UMX0 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC28.84■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms