Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HNF4AP41235 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HNF4AP41235 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HNF4AP41235 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
HNF4AP41235 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HNF4AP41235 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.21■■□□□ 1.79
HNF4AP41235 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HNF4AP41235 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.19■■□□□ 1.78
HNF4AP41235 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HNF4AP41235 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.18■■□□□ 1.78
HNF4AP41235 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
HNF4AP41235 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HNF4AP41235 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.16■■□□□ 1.78
HNF4AP41235 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
HNF4AP41235 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.14■■□□□ 1.78
HNF4AP41235 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
HNF4AP41235 SETD8P1-201ENST00000623146 1180 ntBASIC26.14■■□□□ 1.78
HNF4AP41235 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HNF4AP41235 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HNF4AP41235 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HNF4AP41235 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
HNF4AP41235 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HNF4AP41235 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HNF4AP41235 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HNF4AP41235 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HNF4AP41235 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.08■■□□□ 1.77
HNF4AP41235 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.08■■□□□ 1.77
HNF4AP41235 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
HNF4AP41235 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HNF4AP41235 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
HNF4AP41235 AL133380.1-201ENST00000506013 324 ntBASIC26.06■■□□□ 1.76
HNF4AP41235 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
HNF4AP41235 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.06■■□□□ 1.76
HNF4AP41235 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
HNF4AP41235 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.05■■□□□ 1.76
HNF4AP41235 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HNF4AP41235 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.03■■□□□ 1.76
HNF4AP41235 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
HNF4AP41235 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
HNF4AP41235 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
HNF4AP41235 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.01■■□□□ 1.75
HNF4AP41235 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
HNF4AP41235 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HNF4AP41235 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HNF4AP41235 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26■■□□□ 1.75
HNF4AP41235 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
HNF4AP41235 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
HNF4AP41235 AC097358.2-201ENST00000607541 1159 ntBASIC25.98■■□□□ 1.75
HNF4AP41235 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
HNF4AP41235 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
HNF4AP41235 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC25.96■■□□□ 1.75
HNF4AP41235 WASH5P-204ENST00000632292 975 ntBASIC25.96■■□□□ 1.75
HNF4AP41235 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.95■■□□□ 1.74
HNF4AP41235 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.95■■□□□ 1.74
HNF4AP41235 AL161658.1-201ENST00000623641 1967 ntBASIC25.94■■□□□ 1.74
HNF4AP41235 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.93■■□□□ 1.74
HNF4AP41235 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
HNF4AP41235 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.93■■□□□ 1.74
HNF4AP41235 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
HNF4AP41235 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
HNF4AP41235 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HNF4AP41235 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
HNF4AP41235 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HNF4AP41235 AC136428.2-201ENST00000563187 214 ntBASIC25.92■■□□□ 1.74
HNF4AP41235 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
HNF4AP41235 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
HNF4AP41235 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC25.91■■□□□ 1.74
HNF4AP41235 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
HNF4AP41235 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
HNF4AP41235 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC25.9■■□□□ 1.74
HNF4AP41235 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HNF4AP41235 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HNF4AP41235 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.73
HNF4AP41235 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HNF4AP41235 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
HNF4AP41235 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
HNF4AP41235 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
HNF4AP41235 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
HNF4AP41235 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
HNF4AP41235 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
HNF4AP41235 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
HNF4AP41235 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC25.83■■□□□ 1.73
HNF4AP41235 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
HNF4AP41235 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.81■■□□□ 1.72
HNF4AP41235 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.8■■□□□ 1.72
HNF4AP41235 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.8■■□□□ 1.72
HNF4AP41235 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
HNF4AP41235 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HNF4AP41235 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HNF4AP41235 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HNF4AP41235 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.79■■□□□ 1.72
HNF4AP41235 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HNF4AP41235 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HNF4AP41235 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
HNF4AP41235 CAHM-201ENST00000604200 896 ntBASIC25.78■■□□□ 1.72
HNF4AP41235 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.76■■□□□ 1.71
HNF4AP41235 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.76■■□□□ 1.71
HNF4AP41235 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
HNF4AP41235 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
HNF4AP41235 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms