Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.6■■■□□ 2.65
CDKL5O76039 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
CDKL5O76039 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CDKL5O76039 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CDKL5O76039 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CDKL5O76039 RARRES2P7-201ENST00000567349 469 ntBASIC31.58■■■□□ 2.65
CDKL5O76039 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CDKL5O76039 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.57■■■□□ 2.64
CDKL5O76039 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
CDKL5O76039 AL133380.1-201ENST00000506013 324 ntBASIC31.56■■■□□ 2.64
CDKL5O76039 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.55■■■□□ 2.64
CDKL5O76039 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CDKL5O76039 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.55■■■□□ 2.64
CDKL5O76039 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CDKL5O76039 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CDKL5O76039 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.5■■■□□ 2.63
CDKL5O76039 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CDKL5O76039 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.49■■■□□ 2.63
CDKL5O76039 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CDKL5O76039 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CDKL5O76039 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CDKL5O76039 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CDKL5O76039 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CDKL5O76039 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CDKL5O76039 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.45■■■□□ 2.63
CDKL5O76039 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CDKL5O76039 SETD8P1-201ENST00000623146 1180 ntBASIC31.45■■■□□ 2.63
CDKL5O76039 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.43■■■□□ 2.62
CDKL5O76039 WASH5P-204ENST00000632292 975 ntBASIC31.42■■■□□ 2.62
CDKL5O76039 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
CDKL5O76039 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CDKL5O76039 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CDKL5O76039 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.62
CDKL5O76039 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CDKL5O76039 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CDKL5O76039 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.39■■■□□ 2.62
CDKL5O76039 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CDKL5O76039 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CDKL5O76039 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.36■■■□□ 2.61
CDKL5O76039 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.36■■■□□ 2.61
CDKL5O76039 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CDKL5O76039 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CDKL5O76039 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CDKL5O76039 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
CDKL5O76039 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.33■■■□□ 2.61
CDKL5O76039 AL161658.1-201ENST00000623641 1967 ntBASIC31.32■■■□□ 2.6
CDKL5O76039 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CDKL5O76039 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CDKL5O76039 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CDKL5O76039 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CDKL5O76039 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CDKL5O76039 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
CDKL5O76039 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CDKL5O76039 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CDKL5O76039 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
CDKL5O76039 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.24■■■□□ 2.59
CDKL5O76039 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CDKL5O76039 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CDKL5O76039 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
CDKL5O76039 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CDKL5O76039 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.2■■■□□ 2.59
CDKL5O76039 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
CDKL5O76039 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CDKL5O76039 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.17■■■□□ 2.58
CDKL5O76039 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CDKL5O76039 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.16■■■□□ 2.58
CDKL5O76039 AC097358.2-201ENST00000607541 1159 ntBASIC31.16■■■□□ 2.58
CDKL5O76039 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CDKL5O76039 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
CDKL5O76039 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CDKL5O76039 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.15■■■□□ 2.58
CDKL5O76039 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CDKL5O76039 AC136428.2-201ENST00000563187 214 ntBASIC31.15■■■□□ 2.58
CDKL5O76039 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CDKL5O76039 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CDKL5O76039 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CDKL5O76039 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CDKL5O76039 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
CDKL5O76039 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.13■■■□□ 2.57
CDKL5O76039 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CDKL5O76039 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
CDKL5O76039 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.12■■■□□ 2.57
CDKL5O76039 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CDKL5O76039 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
CDKL5O76039 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CDKL5O76039 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CDKL5O76039 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.1■■■□□ 2.57
CDKL5O76039 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CDKL5O76039 AL391121.1-201ENST00000607967 1349 ntBASIC31.09■■■□□ 2.57
CDKL5O76039 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
CDKL5O76039 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CDKL5O76039 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.07■■■□□ 2.56
CDKL5O76039 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CDKL5O76039 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.06■■■□□ 2.56
CDKL5O76039 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CDKL5O76039 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.06■■■□□ 2.56
CDKL5O76039 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.04■■■□□ 2.56
CDKL5O76039 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
CDKL5O76039 CAHM-201ENST00000604200 896 ntBASIC31.04■■■□□ 2.56
CDKL5O76039 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms