Protein–RNA interactions for Protein: O60287

URB1, Nucleolar pre-ribosomal-associated protein 1, humanhuman

Known RBP Predictions only

Length 2,271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
URB1O60287 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
URB1O60287 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
URB1O60287 HSD17B1P1-201ENST00000590052 955 ntBASIC26.11■■□□□ 1.77
URB1O60287 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
URB1O60287 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
URB1O60287 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.1■■□□□ 1.77
URB1O60287 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.09■■□□□ 1.77
URB1O60287 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
URB1O60287 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
URB1O60287 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.04■■□□□ 1.76
URB1O60287 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.03■■□□□ 1.76
URB1O60287 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
URB1O60287 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
URB1O60287 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
URB1O60287 DUX4L29-201ENST00000425409 679 ntBASIC26.01■■□□□ 1.75
URB1O60287 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
URB1O60287 MIR3648-2-201ENST00000581792 180 ntBASIC25.99■■□□□ 1.75
URB1O60287 MIR3648-1-201ENST00000615959 180 ntBASIC25.99■■□□□ 1.75
URB1O60287 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
URB1O60287 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
URB1O60287 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
URB1O60287 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.95■■□□□ 1.75
URB1O60287 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
URB1O60287 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
URB1O60287 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.95■■□□□ 1.74
URB1O60287 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
URB1O60287 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.94■■□□□ 1.74
URB1O60287 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
URB1O60287 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.93■■□□□ 1.74
URB1O60287 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
URB1O60287 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
URB1O60287 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.92■■□□□ 1.74
URB1O60287 AC016575.1-201ENST00000607026 382 ntBASIC25.91■■□□□ 1.74
URB1O60287 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.91■■□□□ 1.74
URB1O60287 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
URB1O60287 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.9■■□□□ 1.74
URB1O60287 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.89■■□□□ 1.74
URB1O60287 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
URB1O60287 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.87■■□□□ 1.73
URB1O60287 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC25.87■■□□□ 1.73
URB1O60287 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
URB1O60287 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.86■■□□□ 1.73
URB1O60287 AC021231.2-201ENST00000594613 730 ntBASIC25.85■■□□□ 1.73
URB1O60287 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.85■■□□□ 1.73
URB1O60287 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
URB1O60287 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
URB1O60287 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
URB1O60287 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
URB1O60287 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
URB1O60287 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
URB1O60287 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.81■■□□□ 1.72
URB1O60287 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.81■■□□□ 1.72
URB1O60287 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
URB1O60287 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
URB1O60287 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
URB1O60287 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
URB1O60287 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
URB1O60287 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.77■■□□□ 1.72
URB1O60287 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
URB1O60287 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.77■■□□□ 1.72
URB1O60287 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.76■■□□□ 1.71
URB1O60287 CR559946.2-201ENST00000623684 991 ntBASIC25.76■■□□□ 1.71
URB1O60287 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.76■■□□□ 1.71
URB1O60287 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
URB1O60287 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
URB1O60287 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.75■■□□□ 1.71
URB1O60287 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
URB1O60287 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
URB1O60287 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.74■■□□□ 1.71
URB1O60287 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
URB1O60287 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.72■■□□□ 1.71
URB1O60287 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
URB1O60287 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
URB1O60287 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.7■■□□□ 1.7
URB1O60287 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
URB1O60287 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.69■■□□□ 1.7
URB1O60287 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.69■■□□□ 1.7
URB1O60287 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
URB1O60287 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
URB1O60287 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.69■■□□□ 1.7
URB1O60287 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
URB1O60287 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
URB1O60287 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
URB1O60287 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.67■■□□□ 1.7
URB1O60287 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
URB1O60287 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
URB1O60287 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.66■■□□□ 1.7
URB1O60287 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
URB1O60287 WASH5P-204ENST00000632292 975 ntBASIC25.66■■□□□ 1.7
URB1O60287 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
URB1O60287 DUX4L11-201ENST00000611504 1267 ntBASIC25.63■■□□□ 1.69
URB1O60287 DUX4L12-201ENST00000614593 1267 ntBASIC25.63■■□□□ 1.69
URB1O60287 DUX4L14-201ENST00000621227 1267 ntBASIC25.63■■□□□ 1.69
URB1O60287 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
URB1O60287 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
URB1O60287 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
URB1O60287 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.62■■□□□ 1.69
URB1O60287 LINC01971-201ENST00000617888 1048 ntBASIC25.62■■□□□ 1.69
URB1O60287 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
URB1O60287 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 7.8 ms