Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 DUX4L28-201ENST00000623687 678 ntBASIC31.49■■■□□ 2.63
SMCHD1A6NHR9 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.48■■■□□ 2.63
SMCHD1A6NHR9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.48■■■□□ 2.63
SMCHD1A6NHR9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SMCHD1A6NHR9 MIR3665-201ENST00000578708 105 ntBASIC31.47■■■□□ 2.63
SMCHD1A6NHR9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
SMCHD1A6NHR9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
SMCHD1A6NHR9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.44■■■□□ 2.62
SMCHD1A6NHR9 WASH5P-204ENST00000632292 975 ntBASIC31.44■■■□□ 2.62
SMCHD1A6NHR9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SMCHD1A6NHR9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SMCHD1A6NHR9 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.42■■■□□ 2.62
SMCHD1A6NHR9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
SMCHD1A6NHR9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.41■■■□□ 2.62
SMCHD1A6NHR9 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
SMCHD1A6NHR9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SMCHD1A6NHR9 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
SMCHD1A6NHR9 AC087741.3-201ENST00000624270 1347 ntBASIC31.39■■■□□ 2.62
SMCHD1A6NHR9 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.39■■■□□ 2.62
SMCHD1A6NHR9 ABHD17AP4-201ENST00000411545 909 ntBASIC31.38■■■□□ 2.61
SMCHD1A6NHR9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SMCHD1A6NHR9 MIR762-201ENST00000390236 83 ntBASIC31.37■■■□□ 2.61
SMCHD1A6NHR9 AC044849.2-201ENST00000606596 710 ntBASIC31.37■■■□□ 2.61
SMCHD1A6NHR9 AC005559.1-201ENST00000589661 871 ntBASIC31.35■■■□□ 2.61
SMCHD1A6NHR9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SMCHD1A6NHR9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.34■■■□□ 2.61
SMCHD1A6NHR9 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SMCHD1A6NHR9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SMCHD1A6NHR9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.34■■■□□ 2.61
SMCHD1A6NHR9 MIR7108-201ENST00000614319 87 ntBASIC31.34■■■□□ 2.61
SMCHD1A6NHR9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.33■■■□□ 2.61
SMCHD1A6NHR9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMCHD1A6NHR9 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMCHD1A6NHR9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.32■■■□□ 2.61
SMCHD1A6NHR9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.32■■■□□ 2.6
SMCHD1A6NHR9 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.31■■■□□ 2.6
SMCHD1A6NHR9 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SMCHD1A6NHR9 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SMCHD1A6NHR9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SMCHD1A6NHR9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
SMCHD1A6NHR9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SMCHD1A6NHR9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
SMCHD1A6NHR9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.26■■■□□ 2.59
SMCHD1A6NHR9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.26■■■□□ 2.59
SMCHD1A6NHR9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SMCHD1A6NHR9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SMCHD1A6NHR9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.24■■■□□ 2.59
SMCHD1A6NHR9 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
SMCHD1A6NHR9 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SMCHD1A6NHR9 HLA-V-202ENST00000446817 847 ntBASIC31.22■■■□□ 2.59
SMCHD1A6NHR9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SMCHD1A6NHR9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
SMCHD1A6NHR9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
SMCHD1A6NHR9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
SMCHD1A6NHR9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
SMCHD1A6NHR9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SMCHD1A6NHR9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.17■■■□□ 2.58
SMCHD1A6NHR9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SMCHD1A6NHR9 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.16■■■□□ 2.58
SMCHD1A6NHR9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SMCHD1A6NHR9 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
SMCHD1A6NHR9 AC120057.4-201ENST00000624722 1615 ntBASIC31.15■■■□□ 2.58
SMCHD1A6NHR9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.14■■■□□ 2.58
SMCHD1A6NHR9 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SMCHD1A6NHR9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
SMCHD1A6NHR9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.12■■■□□ 2.57
SMCHD1A6NHR9 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SMCHD1A6NHR9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SMCHD1A6NHR9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SMCHD1A6NHR9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
SMCHD1A6NHR9 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SMCHD1A6NHR9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.1■■■□□ 2.57
SMCHD1A6NHR9 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
SMCHD1A6NHR9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
SMCHD1A6NHR9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.08■■■□□ 2.57
SMCHD1A6NHR9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.07■■■□□ 2.56
SMCHD1A6NHR9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SMCHD1A6NHR9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
SMCHD1A6NHR9 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SMCHD1A6NHR9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.06■■■□□ 2.56
SMCHD1A6NHR9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SMCHD1A6NHR9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.05■■■□□ 2.56
SMCHD1A6NHR9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.05■■■□□ 2.56
SMCHD1A6NHR9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SMCHD1A6NHR9 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SMCHD1A6NHR9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
SMCHD1A6NHR9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SMCHD1A6NHR9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SMCHD1A6NHR9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.03■■■□□ 2.56
SMCHD1A6NHR9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.03■■■□□ 2.56
SMCHD1A6NHR9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.02■■■□□ 2.56
SMCHD1A6NHR9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SMCHD1A6NHR9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SMCHD1A6NHR9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
SMCHD1A6NHR9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31■■■□□ 2.55
SMCHD1A6NHR9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31■■■□□ 2.55
SMCHD1A6NHR9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.99■■■□□ 2.55
SMCHD1A6NHR9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SMCHD1A6NHR9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.98■■■□□ 2.55
SMCHD1A6NHR9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms