Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
RNF103-CHMP3A0A140T963 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.91■■□□□ 1.74
RNF103-CHMP3A0A140T963 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.9■■□□□ 1.74
RNF103-CHMP3A0A140T963 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
RNF103-CHMP3A0A140T963 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
RNF103-CHMP3A0A140T963 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.89■■□□□ 1.74
RNF103-CHMP3A0A140T963 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.73
RNF103-CHMP3A0A140T963 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.88■■□□□ 1.73
RNF103-CHMP3A0A140T963 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.87■■□□□ 1.73
RNF103-CHMP3A0A140T963 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RNF103-CHMP3A0A140T963 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
RNF103-CHMP3A0A140T963 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
RNF103-CHMP3A0A140T963 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.86■■□□□ 1.73
RNF103-CHMP3A0A140T963 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF103-CHMP3A0A140T963 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF103-CHMP3A0A140T963 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
RNF103-CHMP3A0A140T963 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.84■■□□□ 1.73
RNF103-CHMP3A0A140T963 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 EBPL-203ENST00000378270 579 ntTSL 2 BASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 AP002365.1-201ENST00000603448 772 ntBASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 AL031258.1-201ENST00000623562 325 ntBASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
RNF103-CHMP3A0A140T963 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
RNF103-CHMP3A0A140T963 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF103-CHMP3A0A140T963 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF103-CHMP3A0A140T963 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
RNF103-CHMP3A0A140T963 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.81■■□□□ 1.72
RNF103-CHMP3A0A140T963 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.8■■□□□ 1.72
RNF103-CHMP3A0A140T963 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
RNF103-CHMP3A0A140T963 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF103-CHMP3A0A140T963 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
RNF103-CHMP3A0A140T963 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC25.79■■□□□ 1.72
RNF103-CHMP3A0A140T963 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC25.78■■□□□ 1.72
RNF103-CHMP3A0A140T963 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.77■■□□□ 1.72
RNF103-CHMP3A0A140T963 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
RNF103-CHMP3A0A140T963 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
RNF103-CHMP3A0A140T963 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
RNF103-CHMP3A0A140T963 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
RNF103-CHMP3A0A140T963 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
RNF103-CHMP3A0A140T963 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
RNF103-CHMP3A0A140T963 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RNF103-CHMP3A0A140T963 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
RNF103-CHMP3A0A140T963 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RNF103-CHMP3A0A140T963 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RNF103-CHMP3A0A140T963 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RNF103-CHMP3A0A140T963 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.69■■□□□ 1.7
RNF103-CHMP3A0A140T963 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RNF103-CHMP3A0A140T963 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
RNF103-CHMP3A0A140T963 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RNF103-CHMP3A0A140T963 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RNF103-CHMP3A0A140T963 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC25.67■■□□□ 1.7
RNF103-CHMP3A0A140T963 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
RNF103-CHMP3A0A140T963 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RNF103-CHMP3A0A140T963 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
RNF103-CHMP3A0A140T963 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.64■■□□□ 1.69
RNF103-CHMP3A0A140T963 AL161658.1-201ENST00000623641 1967 ntBASIC25.64■■□□□ 1.69
RNF103-CHMP3A0A140T963 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RNF103-CHMP3A0A140T963 AC139426.1-201ENST00000568218 2529 ntBASIC25.63■■□□□ 1.69
RNF103-CHMP3A0A140T963 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
RNF103-CHMP3A0A140T963 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RNF103-CHMP3A0A140T963 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
RNF103-CHMP3A0A140T963 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
RNF103-CHMP3A0A140T963 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
RNF103-CHMP3A0A140T963 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
RNF103-CHMP3A0A140T963 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
RNF103-CHMP3A0A140T963 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
RNF103-CHMP3A0A140T963 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
RNF103-CHMP3A0A140T963 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
RNF103-CHMP3A0A140T963 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.56■■□□□ 1.68
RNF103-CHMP3A0A140T963 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.56■■□□□ 1.68
RNF103-CHMP3A0A140T963 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
RNF103-CHMP3A0A140T963 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.55■■□□□ 1.68
RNF103-CHMP3A0A140T963 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.54■■□□□ 1.68
RNF103-CHMP3A0A140T963 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
RNF103-CHMP3A0A140T963 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RNF103-CHMP3A0A140T963 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
RNF103-CHMP3A0A140T963 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RNF103-CHMP3A0A140T963 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RNF103-CHMP3A0A140T963 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
RNF103-CHMP3A0A140T963 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.52■■□□□ 1.68
RNF103-CHMP3A0A140T963 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RNF103-CHMP3A0A140T963 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
RNF103-CHMP3A0A140T963 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RNF103-CHMP3A0A140T963 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RNF103-CHMP3A0A140T963 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RNF103-CHMP3A0A140T963 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.51■■□□□ 1.67
RNF103-CHMP3A0A140T963 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.5■■□□□ 1.67
RNF103-CHMP3A0A140T963 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
RNF103-CHMP3A0A140T963 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
RNF103-CHMP3A0A140T963 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC25.49■■□□□ 1.67
RNF103-CHMP3A0A140T963 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC25.48■■□□□ 1.67
RNF103-CHMP3A0A140T963 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC25.48■■□□□ 1.67
RNF103-CHMP3A0A140T963 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
RNF103-CHMP3A0A140T963 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
RNF103-CHMP3A0A140T963 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
RNF103-CHMP3A0A140T963 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
RNF103-CHMP3A0A140T963 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
RNF103-CHMP3A0A140T963 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms