Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.26■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.26■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.24■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.24■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 AC097358.2-201ENST00000607541 1159 ntBASIC30.24■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.23■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.22■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.21■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.21■■■□□ 2.43
NPHP3-ACAD11A0A0J9YXS1 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.16■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 WASH5P-204ENST00000632292 975 ntBASIC30.14■■■□□ 2.42
NPHP3-ACAD11A0A0J9YXS1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.13■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 CAHM-201ENST00000604200 896 ntBASIC30.12■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.1■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.08■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.08■■■□□ 2.41
NPHP3-ACAD11A0A0J9YXS1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.05■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 AL391121.1-201ENST00000607967 1349 ntBASIC30.03■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.02■■■□□ 2.4
NPHP3-ACAD11A0A0J9YXS1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 AL161658.1-201ENST00000623641 1967 ntBASIC30■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.99■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.99■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.98■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
NPHP3-ACAD11A0A0J9YXS1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC29.94■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 SUZ12P1-203ENST00000578195 985 ntBASIC29.92■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.91■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.9■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.89■■■□□ 2.38
NPHP3-ACAD11A0A0J9YXS1 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.86■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
NPHP3-ACAD11A0A0J9YXS1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.82■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.82■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.8■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.8■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.78■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
NPHP3-ACAD11A0A0J9YXS1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.75■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.75■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
NPHP3-ACAD11A0A0J9YXS1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms