Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX4Q33E94 AC144652.1-201ENST00000609974 1624 ntBASIC20.24■□□□□ 0.83
RFX4Q33E94 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
RFX4Q33E94 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RFX4Q33E94 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX4Q33E94 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX4Q33E94 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.24■□□□□ 0.83
RFX4Q33E94 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RFX4Q33E94 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.24■□□□□ 0.83
RFX4Q33E94 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX4Q33E94 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RFX4Q33E94 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
RFX4Q33E94 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.23■□□□□ 0.83
RFX4Q33E94 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RFX4Q33E94 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.23■□□□□ 0.83
RFX4Q33E94 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.23■□□□□ 0.83
RFX4Q33E94 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.23■□□□□ 0.83
RFX4Q33E94 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.23■□□□□ 0.83
RFX4Q33E94 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RFX4Q33E94 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RFX4Q33E94 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RFX4Q33E94 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.22■□□□□ 0.83
RFX4Q33E94 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RFX4Q33E94 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RFX4Q33E94 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.22■□□□□ 0.83
RFX4Q33E94 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.22■□□□□ 0.83
RFX4Q33E94 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX4Q33E94 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX4Q33E94 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RFX4Q33E94 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RFX4Q33E94 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RFX4Q33E94 AC005229.4-201ENST00000610085 2198 ntBASIC20.22■□□□□ 0.83
RFX4Q33E94 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RFX4Q33E94 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.21■□□□□ 0.83
RFX4Q33E94 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RFX4Q33E94 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RFX4Q33E94 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.21■□□□□ 0.83
RFX4Q33E94 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RFX4Q33E94 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
RFX4Q33E94 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RFX4Q33E94 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.2■□□□□ 0.82
RFX4Q33E94 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX4Q33E94 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.2■□□□□ 0.82
RFX4Q33E94 AC012354.3-201ENST00000623734 483 ntBASIC20.2■□□□□ 0.82
RFX4Q33E94 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RFX4Q33E94 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
RFX4Q33E94 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX4Q33E94 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.2■□□□□ 0.82
RFX4Q33E94 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX4Q33E94 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
RFX4Q33E94 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RFX4Q33E94 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.19■□□□□ 0.82
RFX4Q33E94 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RFX4Q33E94 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 AC103834.1-201ENST00000520383 144 ntBASIC20.19■□□□□ 0.82
RFX4Q33E94 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.19■□□□□ 0.82
RFX4Q33E94 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.19■□□□□ 0.82
RFX4Q33E94 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RFX4Q33E94 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
RFX4Q33E94 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.19■□□□□ 0.82
RFX4Q33E94 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.19■□□□□ 0.82
RFX4Q33E94 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RFX4Q33E94 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 AC073130.3-201ENST00000624389 2278 ntBASIC20.18■□□□□ 0.82
RFX4Q33E94 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX4Q33E94 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.18■□□□□ 0.82
RFX4Q33E94 SNX5-217ENST00000606557 1087 ntBASIC20.18■□□□□ 0.82
RFX4Q33E94 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX4Q33E94 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.18■□□□□ 0.82
RFX4Q33E94 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RFX4Q33E94 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms