Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPS15A-202ENST00000562935 427 ntTSL 26.02□□□□□ -1.456e-54■■■■□ 19.6
YBX3P16989 RPS15A-210ENST00000574723 418 ntTSL 34.03□□□□□ -1.766e-54■■■■□ 19.6
YBX3P16989 SH3BP5L-203ENST00000484202 3110 ntTSL 216.56■□□□□ 0.242e-7■■■■□ 19.6
YBX3P16989 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.012e-7■■■■□ 19.6
YBX3P16989 SH3BP5L-202ENST00000475978 4122 ntTSL 214.36□□□□□ -0.112e-7■■■■□ 19.6
YBX3P16989 CKLF-CMTM1-203ENST00000529718 478 ntAPPRIS ALT2 TSL 210.62□□□□□ -0.717e-9■■■■□ 19.6
YBX3P16989 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.031e-6■■■■□ 19.6
YBX3P16989 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC22.89■■□□□ 1.251e-6■■■■□ 19.6
YBX3P16989 TMEM214-202ENST00000321326 2700 ntTSL 221.13■□□□□ 0.971e-6■■■■□ 19.6
YBX3P16989 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.94■□□□□ 0.941e-6■■■■□ 19.6
YBX3P16989 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.481e-6■■■■□ 19.6
YBX3P16989 TMEM214-208ENST00000460665 1967 ntTSL 216.53■□□□□ 0.241e-6■■■■□ 19.6
YBX3P16989 ATIC-208ENST00000444305 569 ntTSL 420.5■□□□□ 0.871e-7■■■■□ 19.6
YBX3P16989 ATIC-214ENST00000488712 744 ntTSL 314.84□□□□□ -0.031e-7■■■■□ 19.6
YBX3P16989 ATIC-202ENST00000413174 695 ntTSL 510.93□□□□□ -0.661e-7■■■■□ 19.6
YBX3P16989 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.071e-7■■■■□ 19.6
YBX3P16989 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.922e-7■■■■□ 19.6
YBX3P16989 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC25.11■■□□□ 1.612e-7■■■■□ 19.6
YBX3P16989 ADA-209ENST00000545776 549 ntTSL 523.29■■□□□ 1.321e-7■■■■□ 19.6
YBX3P16989 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.29■■□□□ 1.322e-7■■■■□ 19.6
YBX3P16989 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC22.27■■□□□ 1.161e-7■■■■□ 19.6
YBX3P16989 ADA-206ENST00000536532 1356 ntTSL 521.75■■□□□ 1.071e-7■■■■□ 19.6
YBX3P16989 ADA-203ENST00000492931 1276 ntTSL 521.31■■□□□ 11e-7■■■■□ 19.6
YBX3P16989 ADA-205ENST00000536076 481 ntTSL 420.53■□□□□ 0.881e-7■■■■□ 19.6
YBX3P16989 ADA-208ENST00000539235 812 ntTSL 516.46■□□□□ 0.231e-7■■■■□ 19.6
YBX3P16989 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.242e-6■■■■□ 19.5
YBX3P16989 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.441e-6■■■■□ 19.5
YBX3P16989 GCAT-205ENST00000445195 583 ntTSL 328.78■■■□□ 2.21e-7■■■■□ 19.5
YBX3P16989 GCAT-207ENST00000478203 551 ntTSL 223.59■■□□□ 1.371e-7■■■■□ 19.5
YBX3P16989 DIS3-203ENST00000475871 716 ntTSL 423.57■■□□□ 1.366e-13■■■■□ 19.5
YBX3P16989 DIS3-204ENST00000490646 2934 ntTSL 517.65■□□□□ 0.426e-13■■■■□ 19.5
YBX3P16989 RPL4-216ENST00000569438 565 ntTSL 519.4■□□□□ 0.72e-57■■■■□ 19.5
YBX3P16989 RPL4-212ENST00000566622 817 ntTSL 218.84■□□□□ 0.612e-57■■■■□ 19.5
YBX3P16989 RPL4-213ENST00000566624 819 ntTSL 215.72■□□□□ 0.112e-57■■■■□ 19.5
YBX3P16989 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.63■■□□□ 1.052e-8■■■■□ 19.5
YBX3P16989 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.19■□□□□ 0.822e-8■■■■□ 19.5
YBX3P16989 RPL28-202ENST00000426763 5620 ntTSL 1 (best)14.3□□□□□ -0.122e-8■■■■□ 19.5
YBX3P16989 RPL28-201ENST00000344063 4796 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.642e-8■■■■□ 19.5
YBX3P16989 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.113e-9■■■■□ 19.5
YBX3P16989 IDH1-203ENST00000415913 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.083e-9■■■■□ 19.5
YBX3P16989 IDH1-201ENST00000345146 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.433e-9■■■■□ 19.5
YBX3P16989 HIST1H3J-202ENST00000479986 522 ntTSL 229.22■■■□□ 2.279e-27■■■■□ 19.5
YBX3P16989 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.859e-7■■■■□ 19.5
YBX3P16989 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.19■□□□□ 0.029e-7■■■■□ 19.5
YBX3P16989 GMNN-203ENST00000378054 653 ntTSL 322.25■■□□□ 1.152e-10■■■■□ 19.5
YBX3P16989 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.042e-10■■■■□ 19.5
YBX3P16989 GMNN-202ENST00000356509 1133 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.152e-10■■■■□ 19.5
YBX3P16989 GMNN-207ENST00000620958 1039 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.142e-10■■■■□ 19.5
YBX3P16989 GMNN-204ENST00000378059 688 ntTSL 27.94□□□□□ -1.142e-10■■■■□ 19.5
YBX3P16989 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.65■■□□□ 1.064e-49■■■■□ 19.5
YBX3P16989 RPL30-203ENST00000517489 631 ntTSL 220.05■□□□□ 0.84e-49■■■■□ 19.5
YBX3P16989 RPL30-206ENST00000518850 614 ntTSL 220.05■□□□□ 0.84e-49■■■■□ 19.5
YBX3P16989 RPL30-211ENST00000521726 1129 ntTSL 319.11■□□□□ 0.654e-49■■■■□ 19.5
YBX3P16989 RPL30-205ENST00000518164 1128 ntTSL 1 (best)16.92■□□□□ 0.34e-49■■■■□ 19.5
YBX3P16989 RPL30-213ENST00000523172 274 ntTSL 5 BASIC16.92■□□□□ 0.34e-49■■■■□ 19.5
YBX3P16989 RPL30-201ENST00000287038 543 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.124e-49■■■■□ 19.5
YBX3P16989 RPL30-209ENST00000521291 575 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.254e-49■■■■□ 19.5
YBX3P16989 CLK3-219ENST00000567805 327 ntTSL 36.37□□□□□ -1.393e-6■■■■□ 19.5
YBX3P16989 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.98■□□□□ 0.951e-6■■■■□ 19.5
YBX3P16989 ANKMY1-218ENST00000462004 582 ntTSL 420.25■□□□□ 0.831e-6■■■■□ 19.5
YBX3P16989 ANKMY1-216ENST00000443318 565 ntTSL 318.98■□□□□ 0.631e-6■■■■□ 19.5
YBX3P16989 ANKMY1-215ENST00000441168 555 ntTSL 417.82■□□□□ 0.441e-6■■■■□ 19.5
YBX3P16989 ANKMY1-224ENST00000496300 1569 ntTSL 517.49■□□□□ 0.391e-6■■■■□ 19.5
YBX3P16989 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.46■□□□□ 0.391e-6■■■■□ 19.5
YBX3P16989 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.46■□□□□ 0.391e-6■■■■□ 19.5
YBX3P16989 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17■□□□□ 0.311e-6■■■■□ 19.5
YBX3P16989 ANKMY1-222ENST00000484526 2969 ntTSL 216.81■□□□□ 0.281e-6■■■■□ 19.5
YBX3P16989 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.64■□□□□ 0.091e-6■■■■□ 19.5
YBX3P16989 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.66□□□□□ -0.061e-6■■■■□ 19.5
YBX3P16989 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.49□□□□□ -0.091e-6■■■■□ 19.5
YBX3P16989 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.161e-6■■■■□ 19.5
YBX3P16989 ANKMY1-201ENST00000272972 3228 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.181e-6■■■■□ 19.5
YBX3P16989 ANKMY1-217ENST00000459901 3936 ntTSL 411.02□□□□□ -0.651e-6■■■■□ 19.5
YBX3P16989 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.034e-7■■■■□ 19.5
YBX3P16989 CDK5RAP2-212ENST00000480112 5826 ntTSL 1 (best)12.96□□□□□ -0.344e-7■■■■□ 19.5
YBX3P16989 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.554e-7■■■■□ 19.5
YBX3P16989 CDK5RAP2-203ENST00000360822 5551 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.854e-7■■■■□ 19.5
YBX3P16989 CDK5RAP2-204ENST00000416449 3902 ntTSL 59.59□□□□□ -0.874e-7■■■■□ 19.5
YBX3P16989 CDK5RAP2-209ENST00000473282 5956 ntTSL 1 (best)7.82□□□□□ -1.164e-7■■■■□ 19.5
YBX3P16989 NME1-208ENST00000487481 987 ntTSL 221.86■■□□□ 1.092e-8■■■■□ 19.5
YBX3P16989 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.88e-9■■■■□ 19.5
YBX3P16989 LATS1-203ENST00000441107 3879 ntTSL 1 (best)3.65□□□□□ -1.838e-9■■■■□ 19.5
YBX3P16989 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.53e-8■■■■□ 19.5
YBX3P16989 AGBL5-210ENST00000489683 1850 ntTSL 529.68■■■□□ 2.341e-7■■■■□ 19.5
YBX3P16989 HIPK1-202ENST00000361587 5766 ntTSL 1 (best)10.75□□□□□ -0.695e-8■■■■□ 19.5
YBX3P16989 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.863e-8■■■■□ 19.5
YBX3P16989 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.36■■□□□ 1.813e-8■■■■□ 19.5
YBX3P16989 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.743e-8■■■■□ 19.5
YBX3P16989 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC16.96■□□□□ 0.313e-8■■■■□ 19.5
YBX3P16989 HECTD1-208ENST00000554882 3748 ntTSL 56.44□□□□□ -1.381e-11■■■■□ 19.4
YBX3P16989 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.896e-7■■■■□ 19.4
YBX3P16989 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.154e-7■■■■□ 19.4
YBX3P16989 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC7.94□□□□□ -1.144e-7■■■■□ 19.4
YBX3P16989 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC7.79□□□□□ -1.164e-7■■■■□ 19.4
YBX3P16989 GYG1-207ENST00000478067 476 ntTSL 417.35■□□□□ 0.378e-7■■■■□ 19.4
YBX3P16989 GYG1-212ENST00000492285 657 ntTSL 411.93□□□□□ -0.58e-7■■■■□ 19.4
YBX3P16989 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.071e-7■■■■□ 19.4
YBX3P16989 TSPAN3-209ENST00000560715 2892 ntTSL 27.13□□□□□ -1.271e-8■■■■□ 19.4
YBX3P16989 RNF181-206ENST00000461845 623 ntTSL 217.48■□□□□ 0.392e-13■■■■□ 19.4
YBX3P16989 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.392e-13■■■■□ 19.4
Retrieved 100 of 29,075 protein–RNA pairs in 350.9 ms