Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PHF1-209ENST00000487667 1930 ntTSL 522.86■■□□□ 1.251e-7■■■□□ 17.9
DDX55Q8NHQ9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.74■■□□□ 1.235e-11■■■□□ 17.9
DDX55Q8NHQ9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.143e-11■■■□□ 17.9
DDX55Q8NHQ9 PNCK-213ENST00000438984 326 ntTSL 322.09■■□□□ 1.133e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-231ENST00000488994 1437 ntTSL 221.37■■□□□ 1.013e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.06■□□□□ 0.963e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.5■□□□□ 0.713e-7■■■□□ 17.9
DDX55Q8NHQ9 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC19.18■□□□□ 0.663e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-224ENST00000472324 2143 ntTSL 1 (best)19.04■□□□□ 0.643e-7■■■□□ 17.9
DDX55Q8NHQ9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.8■□□□□ 0.61e-7■■■□□ 17.9
DDX55Q8NHQ9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.583e-7■■■□□ 17.9
DDX55Q8NHQ9 NISCH-213ENST00000489895 5350 ntTSL 218.35■□□□□ 0.533e-11■■■□□ 17.9
DDX55Q8NHQ9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.531e-7■■■□□ 17.9
DDX55Q8NHQ9 PHF1-211ENST00000495509 1752 ntTSL 218.28■□□□□ 0.521e-7■■■□□ 17.9
DDX55Q8NHQ9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.54■□□□□ 0.43e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-223ENST00000496360 2080 ntTSL 215.95■□□□□ 0.143e-7■■■□□ 17.9
DDX55Q8NHQ9 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.083e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-207ENST00000442046 2299 ntTSL 515.4■□□□□ 0.063e-7■■■□□ 17.9
DDX55Q8NHQ9 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.083e-11■■■□□ 17.9
DDX55Q8NHQ9 MACF1-202ENST00000360115 2824 ntTSL 513.94□□□□□ -0.183e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-208ENST00000446276 2559 ntTSL 513.86□□□□□ -0.193e-7■■■□□ 17.9
DDX55Q8NHQ9 KDELR2-205ENST00000463747 376 ntTSL 513.51□□□□□ -0.253e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-209ENST00000462103 627 ntTSL 313.26□□□□□ -0.293e-7■■■□□ 17.9
DDX55Q8NHQ9 C1QBP-202ENST00000570805 688 ntTSL 312.59□□□□□ -0.393e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-225ENST00000497807 2689 ntTSL 1 (best)11.81□□□□□ -0.523e-7■■■□□ 17.9
DDX55Q8NHQ9 KDELR2-202ENST00000382267 583 ntTSL 411.72□□□□□ -0.533e-7■■■□□ 17.9
DDX55Q8NHQ9 KDELR2-204ENST00000462052 382 ntTSL 210.08□□□□□ -0.83e-7■■■□□ 17.9
DDX55Q8NHQ9 MLEC-204ENST00000535656 543 ntTSL 39.11□□□□□ -0.953e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-206ENST00000422234 477 ntTSL 59.02□□□□□ -0.973e-7■■■□□ 17.9
DDX55Q8NHQ9 C1D-202ENST00000407324 1379 ntTSL 3 BASIC8.22□□□□□ -1.094e-8■■■□□ 17.9
DDX55Q8NHQ9 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC8.19□□□□□ -1.13e-7■■■□□ 17.9
DDX55Q8NHQ9 TFPI-211ENST00000481132 7690 ntTSL 27.3□□□□□ -1.243e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.68□□□□□ -1.343e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-205ENST00000372925 14496 ntTSL 56.58□□□□□ -1.363e-7■■■□□ 17.9
DDX55Q8NHQ9 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC6.58□□□□□ -1.363e-7■■■□□ 17.9
DDX55Q8NHQ9 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC6.22□□□□□ -1.413e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-210ENST00000462496 526 ntTSL 35.48□□□□□ -1.533e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.35□□□□□ -1.553e-7■■■□□ 17.9
DDX55Q8NHQ9 TFPI-208ENST00000435414 687 ntTSL 54.87□□□□□ -1.633e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.643e-7■■■□□ 17.9
DDX55Q8NHQ9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.654e-8■■■□□ 17.9
DDX55Q8NHQ9 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.743e-7■■■□□ 17.9
DDX55Q8NHQ9 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.97□□□□□ -1.773e-7■■■□□ 17.9
DDX55Q8NHQ9 SELENOH-202ENST00000528798 469 ntTSL 218.78■□□□□ 0.63e-13■■■□□ 17.9
DDX55Q8NHQ9 SELENOH-205ENST00000534386 1039 ntTSL 218.13■□□□□ 0.493e-13■■■□□ 17.9
DDX55Q8NHQ9 AP001931.1-201ENST00000531074 580 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.273e-13■■■□□ 17.9
DDX55Q8NHQ9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.882e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.722e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.322e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC23.01■■□□□ 1.272e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC22.65■■□□□ 1.222e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.962e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.69■□□□□ 0.742e-7■■■□□ 17.9
DDX55Q8NHQ9 LY6E-215ENST00000523847 427 ntTSL 3 BASIC15.98■□□□□ 0.152e-7■■■□□ 17.9
DDX55Q8NHQ9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.246e-8■■■□□ 17.9
DDX55Q8NHQ9 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.446e-8■■■□□ 17.9
DDX55Q8NHQ9 BCOR-208ENST00000413905 1945 ntTSL 514.63□□□□□ -0.074e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.364e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-204ENST00000378463 2230 ntTSL 5 BASIC12.26□□□□□ -0.454e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-210ENST00000442018 2189 ntTSL 211.82□□□□□ -0.524e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.614e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-201ENST00000342274 6390 ntAPPRIS P3 TSL 5 BASIC11.07□□□□□ -0.644e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.844e-11■■■□□ 17.9
DDX55Q8NHQ9 BCOR-209ENST00000427012 1969 ntTSL 59.19□□□□□ -0.944e-11■■■□□ 17.9
DDX55Q8NHQ9 HERPUD1-219ENST00000570273 1425 ntTSL 1 (best)18■□□□□ 0.472e-12■■■□□ 17.9
DDX55Q8NHQ9 POLR2L-202ENST00000534030 585 ntTSL 423.7■■□□□ 1.385e-21■■■□□ 17.9
DDX55Q8NHQ9 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.35e-21■■■□□ 17.9
DDX55Q8NHQ9 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.752e-7■■■□□ 17.9
DDX55Q8NHQ9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.352e-7■■■□□ 17.9
DDX55Q8NHQ9 ZNF444-204ENST00000587236 5565 ntTSL 217.55■□□□□ 0.42e-7■■■□□ 17.9
DDX55Q8NHQ9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.17■■■□□ 2.587e-8■■■□□ 17.9
DDX55Q8NHQ9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.557e-8■■■□□ 17.9
DDX55Q8NHQ9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.167e-8■■■□□ 17.9
DDX55Q8NHQ9 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.13■□□□□ 0.337e-8■■■□□ 17.9
DDX55Q8NHQ9 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC15.38■□□□□ 0.057e-8■■■□□ 17.9
DDX55Q8NHQ9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.73■■□□□ 1.231e-7■■■□□ 17.9
DDX55Q8NHQ9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC25.44■■□□□ 1.664e-6■■■□□ 17.9
DDX55Q8NHQ9 C19orf81-202ENST00000458538 493 ntAPPRIS ALT2 TSL 318.8■□□□□ 0.64e-6■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-207ENST00000482447 1711 ntTSL 1 (best)25.92■■□□□ 1.741e-12■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.341e-12■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.84■■□□□ 1.091e-12■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-204ENST00000395117 1745 ntTSL 221.61■■□□□ 1.051e-12■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.021e-12■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.68■□□□□ 0.91e-12■■■□□ 17.9
DDX55Q8NHQ9 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.64■□□□□ 0.571e-12■■■□□ 17.9
DDX55Q8NHQ9 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.094e-9■■■□□ 17.9
DDX55Q8NHQ9 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.166e-10■■■□□ 17.9
DDX55Q8NHQ9 ADAR-201ENST00000368471 6515 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.646e-10■■■□□ 17.9
DDX55Q8NHQ9 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC23.78■■□□□ 1.48e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.878e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.7■□□□□ 0.748e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.55■□□□□ 0.728e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-218ENST00000515752 1809 ntTSL 516.82■□□□□ 0.288e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-208ENST00000507522 644 ntTSL 514.85□□□□□ -0.038e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-219ENST00000515815 704 ntTSL 314.83□□□□□ -0.048e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-209ENST00000509082 434 ntTSL 514.83□□□□□ -0.048e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-211ENST00000509564 630 ntTSL 314.83□□□□□ -0.048e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-203ENST00000503674 2426 ntTSL 214.66□□□□□ -0.068e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-216ENST00000514027 2209 ntTSL 213.24□□□□□ -0.298e-20■■■□□ 17.8
DDX55Q8NHQ9 SDHA-214ENST00000511810 3001 ntTSL 211□□□□□ -0.658e-20■■■□□ 17.8
Retrieved 100 of 15,504 protein–RNA pairs in 152.2 ms