Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.25■□□□□ 0.67
LSM6P62312 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM6P62312 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM6P62312 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.25■□□□□ 0.67
LSM6P62312 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM6P62312 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.25■□□□□ 0.67
LSM6P62312 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.25■□□□□ 0.67
LSM6P62312 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM6P62312 AC080038.3-201ENST00000623346 1952 ntBASIC19.24■□□□□ 0.67
LSM6P62312 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LSM6P62312 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM6P62312 AC092053.2-201ENST00000640557 1818 ntBASIC19.24■□□□□ 0.67
LSM6P62312 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM6P62312 MIR4466-201ENST00000606121 54 ntBASIC19.24■□□□□ 0.67
LSM6P62312 AL138724.1-201ENST00000606771 1088 ntBASIC19.24■□□□□ 0.67
LSM6P62312 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LSM6P62312 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM6P62312 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LSM6P62312 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM6P62312 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM6P62312 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
LSM6P62312 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.23■□□□□ 0.67
LSM6P62312 AL031602.1-201ENST00000633169 911 ntBASIC19.23■□□□□ 0.67
LSM6P62312 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.23■□□□□ 0.67
LSM6P62312 AC137767.1-201ENST00000602918 1920 ntBASIC19.23■□□□□ 0.67
LSM6P62312 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM6P62312 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM6P62312 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LSM6P62312 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM6P62312 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.22■□□□□ 0.67
LSM6P62312 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM6P62312 AC131281.2-201ENST00000520478 145 ntBASIC19.22■□□□□ 0.67
LSM6P62312 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM6P62312 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.22■□□□□ 0.67
LSM6P62312 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LSM6P62312 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM6P62312 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM6P62312 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM6P62312 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM6P62312 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM6P62312 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.21■□□□□ 0.67
LSM6P62312 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
LSM6P62312 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM6P62312 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM6P62312 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LSM6P62312 OR2I1P-207ENST00000453522 948 ntBASIC19.21■□□□□ 0.67
LSM6P62312 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.21■□□□□ 0.67
LSM6P62312 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM6P62312 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM6P62312 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM6P62312 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM6P62312 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.21■□□□□ 0.67
LSM6P62312 AC068587.7-201ENST00000641602 218 ntBASIC19.21■□□□□ 0.67
LSM6P62312 SYT6-210ENST00000641643 1587 ntBASIC19.21■□□□□ 0.67
LSM6P62312 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
LSM6P62312 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM6P62312 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM6P62312 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM6P62312 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.2■□□□□ 0.66
LSM6P62312 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.2■□□□□ 0.66
LSM6P62312 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.2■□□□□ 0.66
LSM6P62312 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.2■□□□□ 0.66
LSM6P62312 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LSM6P62312 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LSM6P62312 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LSM6P62312 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM6P62312 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
LSM6P62312 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.19■□□□□ 0.66
LSM6P62312 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.19■□□□□ 0.66
LSM6P62312 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.19■□□□□ 0.66
LSM6P62312 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LSM6P62312 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LSM6P62312 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LSM6P62312 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.19■□□□□ 0.66
LSM6P62312 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LSM6P62312 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LSM6P62312 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LSM6P62312 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.18■□□□□ 0.66
LSM6P62312 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.18■□□□□ 0.66
LSM6P62312 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms