Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SEC61A2Q9H9S3 C17orf82-201ENST00000623772 1530 ntBASIC19.62■□□□□ 0.73
SEC61A2Q9H9S3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SEC61A2Q9H9S3 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEC61A2Q9H9S3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SEC61A2Q9H9S3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SEC61A2Q9H9S3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 DUX4L4-201ENST00000566884 1269 ntBASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
SEC61A2Q9H9S3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.6■□□□□ 0.73
SEC61A2Q9H9S3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SEC61A2Q9H9S3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.58■□□□□ 0.73
SEC61A2Q9H9S3 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEC61A2Q9H9S3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SEC61A2Q9H9S3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SEC61A2Q9H9S3 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SEC61A2Q9H9S3 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 SRD5A1P1-201ENST00000442297 786 ntBASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 AC009086.3-201ENST00000623486 1008 ntBASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SEC61A2Q9H9S3 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SEC61A2Q9H9S3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 AC096631.2-201ENST00000436136 790 ntBASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 AL117328.2-201ENST00000624617 1940 ntBASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.56■□□□□ 0.72
SEC61A2Q9H9S3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SEC61A2Q9H9S3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms