Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USB1Q9BQ65 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USB1Q9BQ65 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.46■□□□□ 0.71
USB1Q9BQ65 ZNRF2P3-201ENST00000424200 374 ntBASIC19.46■□□□□ 0.71
USB1Q9BQ65 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.46■□□□□ 0.71
USB1Q9BQ65 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USB1Q9BQ65 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USB1Q9BQ65 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USB1Q9BQ65 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 OR2I1P-207ENST00000453522 948 ntBASIC19.45■□□□□ 0.7
USB1Q9BQ65 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 AC126544.1-201ENST00000580842 1059 ntBASIC19.45■□□□□ 0.7
USB1Q9BQ65 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
USB1Q9BQ65 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USB1Q9BQ65 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.44■□□□□ 0.7
USB1Q9BQ65 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 IRS3P-201ENST00000223076 1006 ntBASIC19.44■□□□□ 0.7
USB1Q9BQ65 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.44■□□□□ 0.7
USB1Q9BQ65 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USB1Q9BQ65 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.43■□□□□ 0.7
USB1Q9BQ65 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.43■□□□□ 0.7
USB1Q9BQ65 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.43■□□□□ 0.7
USB1Q9BQ65 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.43■□□□□ 0.7
USB1Q9BQ65 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.43■□□□□ 0.7
USB1Q9BQ65 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USB1Q9BQ65 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
USB1Q9BQ65 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.43■□□□□ 0.7
USB1Q9BQ65 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USB1Q9BQ65 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.42■□□□□ 0.7
USB1Q9BQ65 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USB1Q9BQ65 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.42■□□□□ 0.7
USB1Q9BQ65 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.42■□□□□ 0.7
USB1Q9BQ65 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.42■□□□□ 0.7
USB1Q9BQ65 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USB1Q9BQ65 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
USB1Q9BQ65 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 AP005435.1-201ENST00000529293 1178 ntBASIC19.41■□□□□ 0.7
USB1Q9BQ65 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USB1Q9BQ65 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USB1Q9BQ65 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 AC068587.7-201ENST00000641602 218 ntBASIC19.4■□□□□ 0.7
USB1Q9BQ65 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USB1Q9BQ65 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
USB1Q9BQ65 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms