Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC3O43542 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.8■□□□□ 0.6
XRCC3O43542 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.8■□□□□ 0.6
XRCC3O43542 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
XRCC3O43542 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC3O43542 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.8■□□□□ 0.6
XRCC3O43542 AC244015.2-201ENST00000616358 1861 ntBASIC18.8■□□□□ 0.6
XRCC3O43542 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC3O43542 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC3O43542 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
XRCC3O43542 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 AF131216.4-201ENST00000638924 1588 ntBASIC18.79■□□□□ 0.6
XRCC3O43542 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
XRCC3O43542 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
XRCC3O43542 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC3O43542 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.78■□□□□ 0.6
XRCC3O43542 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 AC019171.1-201ENST00000601251 1056 ntBASIC18.78■□□□□ 0.6
XRCC3O43542 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.78■□□□□ 0.6
XRCC3O43542 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC3O43542 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
XRCC3O43542 RNF126P1-201ENST00000567452 1320 ntBASIC18.77■□□□□ 0.6
XRCC3O43542 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
XRCC3O43542 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.77■□□□□ 0.6
XRCC3O43542 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
XRCC3O43542 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
XRCC3O43542 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
XRCC3O43542 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.77■□□□□ 0.6
XRCC3O43542 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 AC073130.3-201ENST00000624389 2278 ntBASIC18.77■□□□□ 0.6
XRCC3O43542 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
XRCC3O43542 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.77■□□□□ 0.6
XRCC3O43542 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
XRCC3O43542 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.77■□□□□ 0.59
XRCC3O43542 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
XRCC3O43542 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
XRCC3O43542 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
XRCC3O43542 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC3O43542 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC3O43542 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC3O43542 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
XRCC3O43542 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
XRCC3O43542 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC3O43542 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.76■□□□□ 0.59
XRCC3O43542 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
XRCC3O43542 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.76■□□□□ 0.59
XRCC3O43542 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC3O43542 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC3O43542 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC3O43542 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.75■□□□□ 0.59
XRCC3O43542 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
XRCC3O43542 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.75■□□□□ 0.59
XRCC3O43542 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.75■□□□□ 0.59
XRCC3O43542 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC3O43542 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
XRCC3O43542 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.75■□□□□ 0.59
XRCC3O43542 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
XRCC3O43542 LINC01960-201ENST00000563759 1884 ntBASIC18.75■□□□□ 0.59
XRCC3O43542 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.74■□□□□ 0.59
XRCC3O43542 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC3O43542 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.74■□□□□ 0.59
XRCC3O43542 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
XRCC3O43542 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC3O43542 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.74■□□□□ 0.59
XRCC3O43542 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
XRCC3O43542 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
XRCC3O43542 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms