RNA–Protein interactions for RNA: ENST00000319518.12

CPNE7-202, Transcript of copine 7, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE7, Length 2,409 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE7-202ENST00000319518 NISCHQ9Y2I1 1504 aa43.84■■■■■ 4.61
CPNE7-202ENST00000319518 CCDC180Q9P1Z9 1646 aa37.6■■■■□ 3.61
CPNE7-202ENST00000319518 ZCCHC6Q5VYS8 1495 aaKnown RBP36.94■■■■□ 3.5
CPNE7-202ENST00000319518 SHROOM4Q9ULL8 1493 aa36.87■■■■□ 3.49
CPNE7-202ENST00000319518 DCAF8L2P0C7V8 631 aa36.53■■■■□ 3.44
CPNE7-202ENST00000319518 DCAF1Q9Y4B6 1507 aa35.95■■■■□ 3.35
CPNE7-202ENST00000319518 SUPT5HO00267 1087 aaKnown RBP35.81■■■■□ 3.32
CPNE7-202ENST00000319518 ABCC9O60706 1549 aa35.45■■■■□ 3.27
CPNE7-202ENST00000319518 MYO15BQ96JP2 1530 aa35.17■■■■□ 3.22
CPNE7-202ENST00000319518 SCRIBQ14160 1630 aa35.15■■■■□ 3.22
CPNE7-202ENST00000319518 CHIC1Q5VXU3 224 aa34.99■■■■□ 3.19
CPNE7-202ENST00000319518 NACADO15069 1562 aa34.92■■■■□ 3.18
CPNE7-202ENST00000319518 RB1CC1Q8TDY2 1594 aa34.51■■■■□ 3.11
CPNE7-202ENST00000319518 RSF1Q96T23 1441 aaPredicted RBP34.42■■■■□ 3.1
CPNE7-202ENST00000319518 HRCP23327 699 aa34.27■■■■□ 3.08
CPNE7-202ENST00000319518 CECR2Q9BXF3 1484 aa34.26■■■■□ 3.08
CPNE7-202ENST00000319518 PCGF6Q9BYE7 350 aa34.09■■■■□ 3.05
CPNE7-202ENST00000319518 MROH2BQ7Z745 1585 aa34.07■■■■□ 3.04
CPNE7-202ENST00000319518 UNC13AQ9UPW8 1703 aa34.02■■■■□ 3.04
CPNE7-202ENST00000319518 LOC105371045A0A1W2PR82 267 aa33.98■■■■□ 3.03
CPNE7-202ENST00000319518 WIZO95785 1651 aa33.85■■■■□ 3.01
CPNE7-202ENST00000319518 PABPN1Q86U42 306 aaKnown RBP eCLIP33.75■■■□□ 2.99
CPNE7-202ENST00000319518 BAZ1AQ9NRL2 1556 aaPredicted RBP33.71■■■□□ 2.99
CPNE7-202ENST00000319518 BICRAQ9NZM4 1560 aa33.62■■■□□ 2.97
CPNE7-202ENST00000319518 PPARGC1BQ86YN6 1023 aaKnown RBP33.58■■■□□ 2.97
CPNE7-202ENST00000319518 SMARCA4P51532 1647 aa33.54■■■□□ 2.96
CPNE7-202ENST00000319518 TRIM41Q8WV44 630 aa33.38■■■□□ 2.93
CPNE7-202ENST00000319518 TRIM26Q12899 539 aaPredicted RBP33.37■■■□□ 2.93
CPNE7-202ENST00000319518 TOP2AP11388 1531 aaKnown RBP33.29■■■□□ 2.92
CPNE7-202ENST00000319518 CCDC88BA6NC98 1476 aa33.14■■■□□ 2.9
CPNE7-202ENST00000319518 FAM9AQ8IZU1 332 aaPredicted RBP33.12■■■□□ 2.89
CPNE7-202ENST00000319518 SMARCA2P51531 1590 aa33.1■■■□□ 2.89
CPNE7-202ENST00000319518 EIF4G1Q04637 1599 aaKnown RBP33.08■■■□□ 2.89
CPNE7-202ENST00000319518 PEG3Q9GZU2 1588 aa32.92■■■□□ 2.86
CPNE7-202ENST00000319518 EHMT2Q96KQ7 1210 aa32.87■■■□□ 2.85
CPNE7-202ENST00000319518 ATAD2BQ9ULI0 1458 aa32.85■■■□□ 2.85
CPNE7-202ENST00000319518 ABCC8Q09428 1581 aa32.84■■■□□ 2.85
CPNE7-202ENST00000319518 BAZ1BQ9UIG0 1483 aaKnown RBP32.71■■■□□ 2.83
CPNE7-202ENST00000319518 ZEB1P37275 1124 aaPredicted RBP32.65■■■□□ 2.82
CPNE7-202ENST00000319518 SOGA1O94964 1423 aa32.38■■■□□ 2.77
CPNE7-202ENST00000319518 WRNQ14191 1432 aaPredicted RBP eCLIP32.34■■■□□ 2.77
CPNE7-202ENST00000319518 NCAPD3P42695 1498 aa32.31■■■□□ 2.76
CPNE7-202ENST00000319518 RUSC2Q8N2Y8 1516 aa32.28■■■□□ 2.76
CPNE7-202ENST00000319518 HMGXB3Q12766 1538 aa32.26■■■□□ 2.75
CPNE7-202ENST00000319518 SYNJ1O43426 1573 aa32.25■■■□□ 2.75
CPNE7-202ENST00000319518 CSRNP3Q8WYN3 585 aa32.09■■■□□ 2.73
CPNE7-202ENST00000319518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.03■■■□□ 2.72
CPNE7-202ENST00000319518 EEA1Q15075 1411 aa32.03■■■□□ 2.72
CPNE7-202ENST00000319518 CEP162Q5TB80 1403 aa31.99■■■□□ 2.71
CPNE7-202ENST00000319518 CC2D2AQ9P2K1 1620 aa31.92■■■□□ 2.7
CPNE7-202ENST00000319518 TNIKQ9UKE5 1360 aa31.9■■■□□ 2.7
CPNE7-202ENST00000319518 UBTFP17480 764 aaKnown RBP31.9■■■□□ 2.7
CPNE7-202ENST00000319518 TOP2BQ02880 1626 aa31.88■■■□□ 2.69
CPNE7-202ENST00000319518 CCER1Q8TC90 406 aaPredicted RBP31.88■■■□□ 2.69
CPNE7-202ENST00000319518 CFTRP13569 1480 aa31.87■■■□□ 2.69
CPNE7-202ENST00000319518 GOLGA3Q08378 1498 aa31.81■■■□□ 2.68
CPNE7-202ENST00000319518 TTBK1Q5TCY1 1321 aaPredicted RBP31.8■■■□□ 2.68
CPNE7-202ENST00000319518 BIVM-ERCC5R4GMW8 1640 aa31.79■■■□□ 2.68
CPNE7-202ENST00000319518 CUX1P39880 1505 aa31.76■■■□□ 2.67
CPNE7-202ENST00000319518 SCAF1Q9H7N4 1312 aaKnown RBP31.75■■■□□ 2.67
CPNE7-202ENST00000319518 CEP164Q9UPV0 1460 aa31.7■■■□□ 2.67
CPNE7-202ENST00000319518 KIF21BO75037 1637 aa31.67■■■□□ 2.66
CPNE7-202ENST00000319518 CADPSQ9ULU8 1353 aa31.65■■■□□ 2.66
CPNE7-202ENST00000319518 RAPGEF2Q9Y4G8 1499 aa31.62■■■□□ 2.65
CPNE7-202ENST00000319518 PRDM2Q13029 1718 aa31.58■■■□□ 2.65
CPNE7-202ENST00000319518 RANGAP1P46060 587 aaPredicted RBP31.5■■■□□ 2.63
CPNE7-202ENST00000319518 CLIP1P30622 1438 aa31.43■■■□□ 2.62
CPNE7-202ENST00000319518 DIEXFQ68CQ4 756 aaKnown RBP31.41■■■□□ 2.62
CPNE7-202ENST00000319518 NESP48681 1621 aa31.39■■■□□ 2.62
CPNE7-202ENST00000319518 KIF27Q86VH2 1401 aa31.39■■■□□ 2.62
CPNE7-202ENST00000319518 PRXQ9BXM0 1461 aa31.38■■■□□ 2.61
CPNE7-202ENST00000319518 DNAJC5BQ9UF47 199 aa31.36■■■□□ 2.61
CPNE7-202ENST00000319518 FANCD2Q9BXW9 1451 aa31.35■■■□□ 2.61
CPNE7-202ENST00000319518 ACIN1Q9UKV3 1341 aaKnown RBP31.32■■■□□ 2.6
CPNE7-202ENST00000319518 NEUROD1Q13562 356 aa31.3■■■□□ 2.6
CPNE7-202ENST00000319518 FGD5Q6ZNL6 1462 aa31.3■■■□□ 2.6
CPNE7-202ENST00000319518 ERICH3Q5RHP9 1530 aa31.28■■■□□ 2.6
CPNE7-202ENST00000319518 CUX2O14529 1486 aa31.27■■■□□ 2.6
CPNE7-202ENST00000319518 VPS8Q8N3P4 1428 aa31.23■■■□□ 2.59
CPNE7-202ENST00000319518 HNRNPUL2Q1KMD3 747 aaKnown RBP31.15■■■□□ 2.58
CPNE7-202ENST00000319518 IGF1RP08069 1367 aa31.14■■■□□ 2.58
CPNE7-202ENST00000319518 PELP1Q8IZL8 1130 aaKnown RBP31.13■■■□□ 2.57
CPNE7-202ENST00000319518 ZNF316A6NFI3 1004 aaPredicted RBP31.12■■■□□ 2.57
CPNE7-202ENST00000319518 RAD54L2Q9Y4B4 1467 aa31.08■■■□□ 2.57
CPNE7-202ENST00000319518 DNMBPQ6XZF7 1577 aa31.08■■■□□ 2.57
CPNE7-202ENST00000319518 TOPBP1Q92547 1522 aa31.08■■■□□ 2.57
CPNE7-202ENST00000319518 LAMC3Q9Y6N6 1575 aa31.05■■■□□ 2.56
CPNE7-202ENST00000319518 ARAP1Q96P48 1450 aa31.04■■■□□ 2.56
CPNE7-202ENST00000319518 POLA1P09884 1462 aaPredicted RBP31.02■■■□□ 2.56
CPNE7-202ENST00000319518 CENPBP07199 599 aaPredicted RBP30.99■■■□□ 2.55
CPNE7-202ENST00000319518 CARMIL1Q5VZK9 1371 aa30.99■■■□□ 2.55
CPNE7-202ENST00000319518 APLP2Q06481 763 aa30.98■■■□□ 2.55
CPNE7-202ENST00000319518 URB2Q14146 1524 aaKnown RBP30.96■■■□□ 2.55
CPNE7-202ENST00000319518 GTF3C3Q9Y5Q9 886 aa30.96■■■□□ 2.55
CPNE7-202ENST00000319518 ABCA10Q8WWZ4 1543 aa30.89■■■□□ 2.54
CPNE7-202ENST00000319518 ARHGAP35Q9NRY4 1499 aa30.89■■■□□ 2.53
CPNE7-202ENST00000319518 PDS5BQ9NTI5 1447 aa30.86■■■□□ 2.53
CPNE7-202ENST00000319518 KIF21AQ7Z4S6 1674 aa30.84■■■□□ 2.53
CPNE7-202ENST00000319518 KANK4Q5T7N3 995 aaPredicted RBP30.78■■■□□ 2.52
CPNE7-202ENST00000319518 MIER1Q8N108 512 aa30.76■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms