Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CLRN3Q8NCR9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 FAM99A-202ENST00000538190 1989 ntBASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CLRN3Q8NCR9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CLRN3Q8NCR9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLRN3Q8NCR9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CLRN3Q8NCR9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLRN3Q8NCR9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 AC080038.3-201ENST00000623346 1952 ntBASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLRN3Q8NCR9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
CLRN3Q8NCR9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms