Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 TSPY20P-201ENST00000450910 630 ntBASIC27.36■■□□□ 1.97
CCDC88AQ3V6T2 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 AC093827.2-201ENST00000512654 315 ntBASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CCDC88AQ3V6T2 KRT19P1-201ENST00000405746 1186 ntBASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 CD99P1-205ENST00000527459 561 ntBASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 AC142086.2-201ENST00000569753 217 ntBASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 KRT18P6-201ENST00000555540 1265 ntBASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC27.34■■□□□ 1.97
CCDC88AQ3V6T2 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC88AQ3V6T2 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC88AQ3V6T2 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC88AQ3V6T2 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
CCDC88AQ3V6T2 SLC7A5P2-201ENST00000553010 536 ntBASIC27.33■■□□□ 1.97
CCDC88AQ3V6T2 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCDC88AQ3V6T2 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
CCDC88AQ3V6T2 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC88AQ3V6T2 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC88AQ3V6T2 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCDC88AQ3V6T2 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC27.32■■□□□ 1.96
CCDC88AQ3V6T2 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
CCDC88AQ3V6T2 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCDC88AQ3V6T2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 GPX1P1-201ENST00000388829 606 ntBASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 GUSBP6-202ENST00000438529 1198 ntBASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.3■■□□□ 1.96
CCDC88AQ3V6T2 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCDC88AQ3V6T2 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC27.28■■□□□ 1.96
CCDC88AQ3V6T2 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 TMEM202-AS1-202ENST00000565181 2325 ntBASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC27.27■■□□□ 1.96
CCDC88AQ3V6T2 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.26■■□□□ 1.95
CCDC88AQ3V6T2 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC27.26■■□□□ 1.95
CCDC88AQ3V6T2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CCDC88AQ3V6T2 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.26■■□□□ 1.95
CCDC88AQ3V6T2 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CCDC88AQ3V6T2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms