Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC142381.2-201ENST00000566120 298 ntBASIC21.19■□□□□ 0.98
LDLRP01130 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
LDLRP01130 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.19■□□□□ 0.98
LDLRP01130 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LDLRP01130 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.19■□□□□ 0.98
LDLRP01130 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDLRP01130 AC242852.2-201ENST00000615738 1807 ntBASIC21.18■□□□□ 0.98
LDLRP01130 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
LDLRP01130 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.18■□□□□ 0.98
LDLRP01130 MIR5787-201ENST00000611784 55 ntBASIC21.18■□□□□ 0.98
LDLRP01130 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDLRP01130 AC135279.3-201ENST00000610945 1311 ntBASIC21.18■□□□□ 0.98
LDLRP01130 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LDLRP01130 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LDLRP01130 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDLRP01130 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
LDLRP01130 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDLRP01130 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.17■□□□□ 0.98
LDLRP01130 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LDLRP01130 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 PBX2P1-201ENST00000493219 1291 ntBASIC21.17■□□□□ 0.98
LDLRP01130 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
LDLRP01130 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDLRP01130 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDLRP01130 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDLRP01130 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.16■□□□□ 0.98
LDLRP01130 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDLRP01130 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
LDLRP01130 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.16■□□□□ 0.98
LDLRP01130 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDLRP01130 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.16■□□□□ 0.98
LDLRP01130 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDLRP01130 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LDLRP01130 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LDLRP01130 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.15■□□□□ 0.98
LDLRP01130 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDLRP01130 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.15■□□□□ 0.98
LDLRP01130 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDLRP01130 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LDLRP01130 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDLRP01130 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.15■□□□□ 0.98
LDLRP01130 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.15■□□□□ 0.98
LDLRP01130 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.15■□□□□ 0.98
LDLRP01130 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
LDLRP01130 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LDLRP01130 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.15■□□□□ 0.98
LDLRP01130 ESRRAP2-201ENST00000418437 1549 ntBASIC21.14■□□□□ 0.98
LDLRP01130 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LDLRP01130 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LDLRP01130 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.14■□□□□ 0.98
LDLRP01130 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDLRP01130 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDLRP01130 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.14■□□□□ 0.97
LDLRP01130 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.14■□□□□ 0.97
LDLRP01130 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDLRP01130 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LDLRP01130 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
LDLRP01130 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.13■□□□□ 0.97
LDLRP01130 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.13■□□□□ 0.97
LDLRP01130 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
LDLRP01130 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
LDLRP01130 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.13■□□□□ 0.97
LDLRP01130 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDLRP01130 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDLRP01130 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDLRP01130 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDLRP01130 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDLRP01130 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.12■□□□□ 0.97
LDLRP01130 AL024507.2-201ENST00000606070 2574 ntBASIC21.12■□□□□ 0.97
LDLRP01130 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDLRP01130 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LDLRP01130 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.12■□□□□ 0.97
LDLRP01130 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LDLRP01130 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.12■□□□□ 0.97
LDLRP01130 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.12■□□□□ 0.97
LDLRP01130 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.12■□□□□ 0.97
LDLRP01130 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.12■□□□□ 0.97
LDLRP01130 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.12■□□□□ 0.97
LDLRP01130 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LDLRP01130 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDLRP01130 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.11■□□□□ 0.97
LDLRP01130 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDLRP01130 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.11■□□□□ 0.97
LDLRP01130 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.11■□□□□ 0.97
LDLRP01130 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LDLRP01130 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDLRP01130 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms