Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
PCNAP12004 PYY2-201ENST00000315776 282 ntBASIC13.25□□□□□ -0.29
PCNAP12004 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 AL592076.1-201ENST00000424448 303 ntBASIC13.25□□□□□ -0.29
PCNAP12004 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.25□□□□□ -0.29
PCNAP12004 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.25□□□□□ -0.29
PCNAP12004 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.25□□□□□ -0.29
PCNAP12004 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
PCNAP12004 AC138701.2-201ENST00000553634 226 ntBASIC13.25□□□□□ -0.29
PCNAP12004 AP005264.5-201ENST00000590066 467 ntBASIC13.25□□□□□ -0.29
PCNAP12004 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.25□□□□□ -0.29
PCNAP12004 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC13.25□□□□□ -0.29
PCNAP12004 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
PCNAP12004 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC13.24□□□□□ -0.29
PCNAP12004 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 PCDHB17P-202ENST00000623466 3066 ntBASIC13.24□□□□□ -0.29
PCNAP12004 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC13.24□□□□□ -0.29
PCNAP12004 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.24□□□□□ -0.29
PCNAP12004 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 IGHJ2P-201ENST00000454480 60 ntBASIC13.24□□□□□ -0.29
PCNAP12004 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 NAA40-205ENST00000539656 577 ntTSL 4 BASIC13.24□□□□□ -0.29
PCNAP12004 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC13.24□□□□□ -0.29
PCNAP12004 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC13.24□□□□□ -0.29
PCNAP12004 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.24□□□□□ -0.29
PCNAP12004 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.24□□□□□ -0.29
PCNAP12004 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC13.24□□□□□ -0.29
PCNAP12004 AC009560.1-201ENST00000620208 434 ntBASIC13.24□□□□□ -0.29
PCNAP12004 AC091812.3-201ENST00000621362 345 ntBASIC13.24□□□□□ -0.29
PCNAP12004 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 ENOX2-204ENST00000394363 4174 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 GRIN1-205ENST00000371555 4003 ntTSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 ODCP-201ENST00000459650 1639 ntBASIC13.24□□□□□ -0.29
PCNAP12004 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
PCNAP12004 ERG-211ENST00000453032 1595 ntTSL 2 BASIC13.24□□□□□ -0.29
PCNAP12004 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PCNAP12004 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC13.23□□□□□ -0.29
PCNAP12004 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.23□□□□□ -0.29
PCNAP12004 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC13.23□□□□□ -0.29
PCNAP12004 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.23□□□□□ -0.29
PCNAP12004 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC13.23□□□□□ -0.29
PCNAP12004 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
PCNAP12004 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC13.23□□□□□ -0.29
PCNAP12004 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC13.23□□□□□ -0.29
PCNAP12004 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
PCNAP12004 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
PCNAP12004 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PCNAP12004 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms